Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04282 ATGGCTGTTCCAAGTTCAGTTTTGAAGGTAGAAGAAATTCAAGGTAGAGGAAGAGGAATTGTTGCATCTCAACCTCTCAAAGCTGGCCAAATCATCCTCACAGATTCACCAATCCTTCTATACCCTGTTTCCCCCTTTTCTCCACATTCATCTTCCTTTTGTGACCATTGTTTCAAATCATTGCAGCATCAATCTTCAATTGTTTCGTGTCCGTCTTGTCACCAATATCGCTTTTGCAATTCAGTTTGTGTCTCGAAAGCTCTCGGTTCTTCGCACTCAACATGGGTTTGTCAAGCATTATCTCAACTCCAAACCAATCCTGTTCTCCTTCAACAGCCCCTCGAACGCCAACTACAAGCTCGTTTTCTTATTGCTGCTTACAATCTTGCTATTACCGCTCCGTCAAATTTTCAAATTTTGTTGTCTCTACAAGGTTCTGATGATAATGATGATGTAGCTCAGTTCCTACACTCCATTATTTCATCCCTGTTTTCGGGTTCATACCCGCGTAAGGAATTGTTTTCTTTGCAACTCACTTCTTCGCTTCTTGCTAAGGATAAGCTTAATGCTTTTGGTTTAATGCATCCTTTCTCTGAAAATGATGAGAATAGGTCTGTTAGAGCTTATGGCATTTACCCTTATGCATCCTTTTTTAACCATGATTGTCTTCCCAATGCATGTAGATTTGATTATGTCGATGTTAGTCCACCTTATCACGCCGATGGTCTTAATAATACTGACTTTGTTATAAGAATGATTCATGATGTTCCTCAAGGTAGGGAGATTTGTTTGAGTTATTTTCCTGTCAATGAAAACTATTCTAGTAGGCAGAAGAGATTGTTGGAAGACTATGGTTTTGCGTGTAATTGTGATCGATGTAATGTTGAATCAAATTGGTCGGATAATGAGAGCGTTGAAGGAAATGCGGAGGAGGATGGACAAGAGGTTATGGTTATGGATGATGATGAGGAGGAGGAGGAGCAAAATGAAAATATGGAACCATCAGACAATGACAATAATGATTTCCCACATGCTTATTTCTTTTTAAAATACATGTGTGATAGAACAAATTGTTGGGGAACGTTAGCTCCTCTACCACCACAAGGTGATACATTATCTAATGTTATGGAATGCAATGTCTGTGTTACAACGATGCTTTTGACTGATGCATTGTATGCTTTGTTGCATGAAGATGGAGGGAACTCTTCCTAG 1212 0.3936 MAVPSSVLKVEEIQGRGRGIVASQPLKAGQIILTDSPILLYPVSPFSPHSSSFCDHCFKSLQHQSSIVSCPSCHQYRFCNSVCVSKALGSSHSTWVCQALSQLQTNPVLLQQPLERQLQARFLIAAYNLAITAPSNFQILLSLQGSDDNDDVAQFLHSIISSLFSGSYPRKELFSLQLTSSLLAKDKLNAFGLMHPFSENDENRSVRAYGIYPYASFFNHDCLPNACRFDYVDVSPPYHADGLNNTDFVIRMIHDVPQGREICLSYFPVNENYSSRQKRLLEDYGFACNCDRCNVESNWSDNESVEGNAEEDGQEVMVMDDDEEEEEQNENMEPSDNDNNDFPHAYFFLKYMCDRTNCWGTLAPLPPQGDTLSNVMECNVCVTTMLLTDALYALLHEDGGNSS 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04282 403 Gene3D - 53 106 - -
Trre8g04282 403 Gene3D - 111 190 - -
Trre8g04282 403 SUPERFAMILY SET domain 4 288 IPR046341 -
Trre8g04282 403 CDD SET_SMYD 199 293 - -
Trre8g04282 403 Pfam SET domain 17 266 IPR001214 GO:0005515
Trre8g04282 403 MobiDBLite consensus disorder prediction 300 340 - -
Trre8g04282 403 Gene3D SET domain 19 293 IPR046341 -
Trre8g04282 403 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 3 383 IPR044238 -
Trre8g04282 403 SMART set_7 6 273 IPR001214 GO:0005515
Trre8g04282 403 ProSiteProfiles SET domain profile. 3 267 IPR001214 GO:0005515
Trre8g04282 403 MobiDBLite consensus disorder prediction 305 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04282 Trre-Chr8 47312672 47315034 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre8g04282 SET 3.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04282 - - psat:127097585 584.719