Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04269 ATGGTTTTTCCAAAACCAGCTTCTGAGTCTGACCTTTTTCTTCCCTATAACTTGACCTGTCCTTATAATACAGACTCTCTTCCTAGGTTTAGTATACCAGAGAATTCAATGCCAAAAGAAGCTGCATACCAAAACATACATGATGAGTTGAAGCTGGATGCTATTCCAAAGTTGAACTTGGCTTCCTTTGTCACAACATCCATGGAGGAAGAATGCAATAAGCTTATTATGGAATCCATCAATAAGAACTATGTTGACATGGATGAATATCCAGCTACCACTGATCTTCATAATCGATGTGTGAACATGATAGCGCGTTTGTTCAATGTTGAGATTGGAGAAAATGAGAGTGCAATTGGTGCAGGAACAGTTGGATCATCCGAGGCCATAATGTTAGCAGGACTTGCATTCAAGAAGAAGTGGCAGAACAAACGCAAGGCCGAAGGCAAACCTTATGATAAGCCTAACATGGTCACCGGTGCGAATGTGCAAGTATGTTGGGAGAAATTTGCTAGGTATTTTGAAGTGGAATTGAGAGAAGTAAATGTGAGAGAAGATTACTATGTAATGGATCCTGCGAAGGCCGTTGAGATGGTAGATGAGAACACGATTTGCGTGGCTGCAATCTTAGGTTCAACTTATAACGGAGAATTCGAAGATGTTAAACGCTTGAATGATCTCTTGTTAGAAAAAAACAAGCAAACTGGATGGGATACACCGATTCATGTTGACGCCGCGAGTGGTGGCTTTATTGCTCCTTTCCTATATCCAGAGCTAGAGTGGGATTTCAGACTCCCATTAGTGAAGAGTATAAATGTTAGTGGCCATAAGTATGGACTTGTTTATGCCGGAATCGGCTGGGTTATATGGAGGACTAAAGAAGACTTGCCTGAAGACCTTATCTTCCATATTAATTACCTTGGAGCTGACCAACCTACCTTCACTCTAAATTTTTCAAAAGGTTCTAGTCAGATAATTGCTCAATATTATCAGCTAATTCGCCTTGGTCAAGAGGGGTATCGGCGTATAATGGAAGACTGTAGAGAAAATGCGATGGTGTTGAAGAAACATTTAGAAGAGACGGGATACTTTAACATACTCTCAAAAGATAATGGAGTTCCTGTAGTGGCATTTTCTCTGAAGGACAGAAGCCAATATGATGAATTCAAGATATCAAAGATGTTGCGGCGCCATGGTTGGGTTGTGCCGGCATATCCAATGCCACCAGGTGCTGAGCACATTAAAGTGCTTCGTGTCGTCATCAGAGCCGAGTTTTCACGCACACTTGCAGAACGCCTTGCGCTTGACATAAAAAATGTGTTGCGCGAGCTTCAAAAACTTCCCCTCAACATTAAGGATGAGAAGTCCTTGGTTGACACTGCATTAGAGGCTAACAGGGAAATCATTGCTCAAGAATCTAACAAGCGTCAGAAAATCATGGCTGCCTAA 1449 0.4175 MVFPKPASESDLFLPYNLTCPYNTDSLPRFSIPENSMPKEAAYQNIHDELKLDAIPKLNLASFVTTSMEEECNKLIMESINKNYVDMDEYPATTDLHNRCVNMIARLFNVEIGENESAIGAGTVGSSEAIMLAGLAFKKKWQNKRKAEGKPYDKPNMVTGANVQVCWEKFARYFEVELREVNVREDYYVMDPAKAVEMVDENTICVAAILGSTYNGEFEDVKRLNDLLLEKNKQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKEDLPEDLIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGQEGYRRIMEDCRENAMVLKKHLEETGYFNILSKDNGVPVVAFSLKDRSQYDEFKISKMLRRHGWVVPAYPMPPGAEHIKVLRVVIRAEFSRTLAERLALDIKNVLRELQKLPLNIKDEKSLVDTALEANREIIAQESNKRQKIMAA 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04269 482 CDD DOPA_deC_like 59 438 - -
Trre8g04269 482 FunFam Glutamate decarboxylase 5 65 - -
Trre8g04269 482 Gene3D - 361 448 - -
Trre8g04269 482 FunFam Glutamate decarboxylase 66 360 - -
Trre8g04269 482 NCBIfam glutamate decarboxylase 23 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Trre8g04269 482 Gene3D - 1 65 - -
Trre8g04269 482 PANTHER GLUTAMATE DECARBOXYLASE 20 467 IPR010107 GO:0004351|GO:0006536|GO:0030170
Trre8g04269 482 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Trre8g04269 482 SUPERFAMILY PLP-dependent transferases 21 446 IPR015424 -
Trre8g04269 482 Gene3D - 66 360 IPR015421 GO:0003824
Trre8g04269 482 FunFam Glutamate decarboxylase 361 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04269 Trre-Chr8 47207922 47210183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04269 1 470 Calmodulin-binding Proteins AT2G02010 74.160 0.0 744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04269 K01580 - gmx:100782330 858.596