Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04265 ATGGTTGCCCAACAGCCGCAACTTCAGATTCAGACTAACCAACCTACACCTTCTCCTCAAGATGAAGCCTTGAAGAGGAACACCGATTGTGTTTACTTTCTTGCATCTCCTTTGACATGCAAAAAGGGAAATGAATGTGAATACCGCCACAGTGAGTATGCTCGAGTCAATCCTAGAGATTGCTACTATTGGTTGAATGGTAACTGCTTGAATCCCAAGTGTTCATTTCGTCATCCGCCTCTTGACGGGTTGATAGGAACACCAACGGCAACCGCTGCTGCTGGACCATCGGTACCCGCGCCACAGATTGCAGCAACACCTGCACCTTACAATTCTAGTAAACAAGCCGTCCCTTGCATTTTCTTCCAAAAGGGGTTTTGCTTAAAAGGTGACAGATGTGCCTTCCAGCACGGACCAATTCCTAACAATGGAAGTAAAATAGCTACACAGGGCTCAATGACCAACCAAGGAGCTGAGAATCCAAGTTTTAAGAAACCTTTTGGCGGTATTGAAAAACATACGCAGGAAAGGAAATCCTCACAAGGAAACGTTGCAACTTTTGGAGGTGCTGAAGCTAAACCTCTCCAAAAATTTGAAAGTGCTCCGCAGAAAAATATATTTAAATTGGAGAAGCGTGTGGCACCGCCACCTGCAGGGTTTGATAGCGAGGCTTCGAGATTTAAGACACCTAGTTCTCCACTGCCGGCCAATGGGCCTAATGTATCCCGGTCTAATCGTGTGCATCAACCTCGTGTGCCGGATGATCACAGTTTCCATAGCGGTAAGGACAGCGACGAGTTTCTCAGAGACTCGTCTCCTGGGTTTGATGTTCTTGTAGCTGATGAGCTTAGGAATTCTGATTACTATCATGGGGAAGATGAATTTGGTAAAGCAAGAGGTCAAGATGAAAGAGGTCTAGACTCTCTGAATGAATTTGATGTAGGGCATTCTGCTGATTATAGTTTAGCCGCTGATATTGATCGAGAAAGATTTCGTGGGCCTCAAGGTTATGACTCGTATGATCACTTGCAAGAGCCATATGGTTGGGAGCCTAGAAAGGCATCGGCCCATATAGAAAGAACTCATCACAGATCTGGCAGTCCTCCTCCTGACAGTGTTGAGGTGTCAGATCTTAGACACCGTTTATCCAAGCGTAGGAAGGGCAATGGTCTAAAATCTGTCGTCGCTCATGATTATGCCCTCGAGAGCCATGGTGAGGAGCGAAGTCATCGGTTCCCTCGGAAGGATTCACACCACTTACCTTCGAATGAAAGACCTGTCAATAATCGTTTCCGAGGCAGAATAACACTTCCACCAAATGGTGGTGACGGTCACCTAGAGCGGGACTTAAACAGAGGAAGGGACTTAGACAGAGGAAGGGACTTAGACAGAGGAAGGGACTCAGACAGAGGAAGAGTCAGTAGTAGGCTATCATCTGGAAGGCTGCAAACCCCTCCCGATGGAAGATTCCACGATAGAATGAGAGGAAGGTTGTCAGATGATGAGAGGGGAAACTTCAGAGGCCGATCGATTGGGGACCGAAGTGGGTTCTCTGCGCCTAAAAGTCTTGCTGAACTTAAATATGGGAGAAGCACTGATAATAGTGAGCAACAATCATTAGGAAAGAGAAAAAGCTTCAGGGATCACCAGCAATACGAAGATGATGTACCATTTGAAGGTCCAAAACCTCTTAGTGAAATTCTGAAGGAGAAGAAAGGAGTCGGAGCTGGCGAAACCTCCTCCCAGAGTCGCAAATCAGCCTTCAATAACAACGAAGGAATTACCGAAAACGGAGCATTGCCAGAAACCGAAACCAAGGAAGACGAATCCAAGATTCAGGCTGCTGAGGGAGTTGACAATACTGATGCAACTCACGGTCAATCATCCGAAGATGGAATGATATACGACGAAGCTGCCGAAGATCAGGAGTACGAAGGTGATGATCAAAGAGAGGAGGGAGACTATGAATATGAACAAGGTGATGAGGAGTATGAGTATGAACAAGTCGAGGAAGGCGAAAATCAAGAGCAAGAATATATGGAAGATGAAGATGGAGATGACTTTGCCAAGAAGATTGGTGTTGTTCTTTCATAA 2094 0.4604 MVAQQPQLQIQTNQPTPSPQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCYYWLNGNCLNPKCSFRHPPLDGLIGTPTATAAAGPSVPAPQIAATPAPYNSSKQAVPCIFFQKGFCLKGDRCAFQHGPIPNNGSKIATQGSMTNQGAENPSFKKPFGGIEKHTQERKSSQGNVATFGGAEAKPLQKFESAPQKNIFKLEKRVAPPPAGFDSEASRFKTPSSPLPANGPNVSRSNRVHQPRVPDDHSFHSGKDSDEFLRDSSPGFDVLVADELRNSDYYHGEDEFGKARGQDERGLDSLNEFDVGHSADYSLAADIDRERFRGPQGYDSYDHLQEPYGWEPRKASAHIERTHHRSGSPPPDSVEVSDLRHRLSKRRKGNGLKSVVAHDYALESHGEERSHRFPRKDSHHLPSNERPVNNRFRGRITLPPNGGDGHLERDLNRGRDLDRGRDLDRGRDSDRGRVSSRLSSGRLQTPPDGRFHDRMRGRLSDDERGNFRGRSIGDRSGFSAPKSLAELKYGRSTDNSEQQSLGKRKSFRDHQQYEDDVPFEGPKPLSEILKEKKGVGAGETSSQSRKSAFNNNEGITENGALPETETKEDESKIQAAEGVDNTDATHGQSSEDGMIYDEAAEDQEYEGDDQREEGDYEYEQGDEEYEYEQVEEGENQEQEYMEDEDGDDFAKKIGVVLS 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04265 697 SUPERFAMILY CCCH zinc finger 114 138 IPR036855 GO:0046872
Trre8g04265 697 MobiDBLite consensus disorder prediction 399 425 - -
Trre8g04265 697 MobiDBLite consensus disorder prediction 351 367 - -
Trre8g04265 697 MobiDBLite consensus disorder prediction 351 697 - -
Trre8g04265 697 MobiDBLite consensus disorder prediction 445 474 - -
Trre8g04265 697 Pfam RNA-binding, Nab2-type zinc finger 118 138 - -
Trre8g04265 697 SMART c3hfinal6 113 139 IPR000571 GO:0046872
Trre8g04265 697 SMART c3hfinal6 25 52 IPR000571 GO:0046872
Trre8g04265 697 SMART c3hfinal6 57 80 IPR000571 GO:0046872
Trre8g04265 697 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 21 695 - -
Trre8g04265 697 MobiDBLite consensus disorder prediction 486 509 - -
Trre8g04265 697 MobiDBLite consensus disorder prediction 576 598 - -
Trre8g04265 697 ProSiteProfiles Zinc finger C3H1-type profile. 55 81 IPR000571 GO:0046872
Trre8g04265 697 Pfam Zinc-finger containing family 25 79 IPR041686 -
Trre8g04265 697 MobiDBLite consensus disorder prediction 1 21 - -
Trre8g04265 697 MobiDBLite consensus disorder prediction 148 184 - -
Trre8g04265 697 MobiDBLite consensus disorder prediction 225 247 - -
Trre8g04265 697 MobiDBLite consensus disorder prediction 214 271 - -
Trre8g04265 697 ProSiteProfiles Zinc finger C3H1-type profile. 24 53 IPR000571 GO:0046872
Trre8g04265 697 MobiDBLite consensus disorder prediction 540 573 - -
Trre8g04265 697 Gene3D - 16 81 - -
Trre8g04265 697 Gene3D - 107 179 - -
Trre8g04265 697 MobiDBLite consensus disorder prediction 248 270 - -
Trre8g04265 697 MobiDBLite consensus disorder prediction 634 683 - -
Trre8g04265 697 MobiDBLite consensus disorder prediction 601 615 - -
Trre8g04265 697 FunFam Zinc finger CCCH domain-containing protein 17 18 81 - -
Trre8g04265 697 ProSiteProfiles Zinc finger C3H1-type profile. 113 140 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04265 Trre-Chr8 47172974 47176102 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre8g04265 zf-CCCH_3 5.4e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04265 - - gmx:100787836 810.831