Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04254 ATGAGACAAAATTTGAGAAACACACGTTACCCGGGAGAGGAGGATCACCAAGTATTGTATGTGATGGATGGATATCAATGGAGGAAATATGGTCAAAAGGTTACTAGAGATAATCCATCTCCTAGACCTTACTTTAGGTGCTCCAATGCTCCAAGCAGCCCAGTTAAAAAGAAGGTGGATAGTAGGAAATGGTGCCAACATCAAAGTCATGAATGA 216 0.412 MRQNLRNTRYPGEEDHQVLYVMDGYQWRKYGQKVTRDNPSPRPYFRCSNAPSSPVKKKVDSRKWCQHQSHE 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04254 71 Pfam WRKY DNA -binding domain 23 62 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g04254 71 Gene3D WRKY domain 9 70 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre8g04254 71 MobiDBLite consensus disorder prediction 56 71 - -
Trre8g04254 71 ProSiteProfiles WRKY domain profile. 16 60 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g04254 71 SUPERFAMILY WRKY DNA-binding domain 18 62 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre8g04254 71 MobiDBLite consensus disorder prediction 33 71 - -
Trre8g04254 71 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 20 59 IPR044810 GO:0003700
Trre8g04254 71 SMART WRKY_cls 21 69 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04254 Trre-Chr8 47118439 47119755 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04254 11 59 WRKY Transcription Factor Family AT4G31800 75.510 5.46e-21 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre8g04254 WRKY 9.3e-14 CL0274