Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04242 ATGGCATCATCACAGGTTGAAATTGCTTCTTTTAATTTATCACAAAATCAGAAAACTCAAAAAACAACATGGGTTTCAAGAGTTGCTAAAAACAACAACAACAACAACAACAACCTTGGAAACCTAAATTTCAACAAAAGATTTCATAATGTGTTTGGTGAGAAAGATGACTCTTCATTGTCTGCATTGGTTAGTCCAAGGCACTCGAAGATCGTTGATCGGTGGGCGGCAAGGCAAGCTCAAGAAGTGGTGTCAAATCTTGGAAAAAATAATAATCAGGATGCTGTTAAGGTGTTTGATAAATTTCCTTCTAGATCGTCGAGTTTTAATTCTAGGAGAGGTAGAGAAGATTCTGTTTCGCCTCCTCGTTCTGATGGATCATCTGATAGCGAGAAAGCATCGAGCCTTGGTGCTTCTTCCCTTGTTCAGATTTGGGAAAAAAGGCTCAACCAATCTAATTGCACAAAACAAAATGTACCAATAACCGGAAGAACTAATTCGGATTTGAGCTGTAATGACACTAATGCATGTTATGTGGATGATCATGGCAGGGTATCAGAAGAAGAAGAATCCTCCGATGAATCATTTATAGGTTGTGAATATGATAAAACAAGAGTTAGTACTGATCAAAATTGTTTACCAAAAGTGAAGTGTAATTCAGATGCTGCTGAAAATGAGAAGAGCAAGGTTGCTGATATTATAAAGAGACTCTATGTTGACAATGATCAAGAGTTAAGTAATAGCGCGACAAATTCTCCATATAGAGAGCGTGATTGTGTTTCCACACCGAAACAATTAACGGAACATAAAAGTTTTGGTCAGGTCACAAGCCACCCGCGTATTAGGGGGCGCCAAGCATTCAATGATTTGATTATGCAGTTTGAGTGTGATCGACATGGAGAGCTTAACAATCTTGCAGAACGAGGCGCGGTTTCTAAGTTCACACAAAGAGGTCGTATTCAGTCATTGCTTCGACTTAGATTATTACAACGTGGAGTAGCAGCTTTCGATCCATCTCGCCCGAAATCAACAGGACATGAAGGGAAAAAACAAAAACAAGGATCAACAGGAAATGAATGGAATAAACAACAACAAGGATCAACAGGACATGAAGGGAATAAACAACTGCAAGGATCAGTAATTATGCAACTAAGGGAAAGATTTGACACAAGAGATGAACAAAGAATTTCATCCCTGAAAGAAATCACTACCATCCATTGTAAGAAACATACACAAAATACTGTGTCTCAAACTAATGCAGGTGTAAAAAAAGAAGGGAATTTAAGTTGTGGTTTTGAAGCTCGAAATGATGATCCAAAAGAAACTATTGAGGAATCTTCATCAAAGGTTGATCAGAATGCAAATGAAATGGTTGATGAAGTAGAGGCAAGAGACCAACAATTATATGATACTATTGAAACCGACTACAACGAGATATTAGAAGAGAAAGAGTGTAGTGACTATAATTATGATGAAACTAGTGCAAGTTATGATTGGATCAGTCCTATTTCTCGGCCTAAAAGCTATTGGGAAGAACTCAGGCAAGAATGGTATAGGGAAATGCTTGACTTTGGTTCAGGCAATGATGAGAGACGCGAACTCCTTCAAAGAAAAACAGTTTCAACTGTCCTTTGTAGCGATTTTCGAGAAAAGATGGATAAATTGATGAAGTCTCACGTGGGAACACAAACACACCTAGTCAATAATCAACACGACGAGGAAGATCAAGAAGAGAATATGGAAAAATTGATGGCATTTTATCGTGACCGCTTGCGCGTTAGAGGCAGTCCCGAAGAAGATGGAAAAGATAGAAATGAAAAAGAAGTGTCAGAGGAAGATGAATGCATCAATAGTGGTTCCGATCATGAACTTAATGATTGTCATAGTGGTTCAGATCATGAACTTGGTGATTGTCATTCCTCATCATCAATACATACACCATCTTCAACAACATGGAGTTATAGAGACACTGACGGCGGGGATGATTCTGCTAGAGCTGCATTTGTATCTTCACCATTGCATTCTCAATCTCAACCTTTCTATCAAGATAGTAGGCAATATTCTTCGCCCGCAAATCAGTCTTCAATTGAAATGGAAATCATATACGATTTGCGAGGGCAAATGGTACTACTTTTTCAAGAGATGTCCGAACTAAGGAAAACACTAAAAAACTGTACAGACATGCAGATGCAAATGCAATTACAACAATCCCAGAACCAAGAGGTTCACAAAGTGAAAGGAAAGAAATGCAGTAACAAGAAATCAAAGAAAGGAAATTGTTGTATTTGCAATGAAAATAAAGTAAACTCAGTTTTATACAGATGTGGTCACATGTGTGCATGTCTCAAATGTGCCAAAGAGTTGCAATGGAAAAGTGGAAAATGTCCAATATGTCAAGTTGAAATAATAGATGTTGTCAAAGTACATACTAACACATAA 2439 0.3784 MASSQVEIASFNLSQNQKTQKTTWVSRVAKNNNNNNNNLGNLNFNKRFHNVFGEKDDSSLSALVSPRHSKIVDRWAARQAQEVVSNLGKNNNQDAVKVFDKFPSRSSSFNSRRGREDSVSPPRSDGSSDSEKASSLGASSLVQIWEKRLNQSNCTKQNVPITGRTNSDLSCNDTNACYVDDHGRVSEEEESSDESFIGCEYDKTRVSTDQNCLPKVKCNSDAAENEKSKVADIIKRLYVDNDQELSNSATNSPYRERDCVSTPKQLTEHKSFGQVTSHPRIRGRQAFNDLIMQFECDRHGELNNLAERGAVSKFTQRGRIQSLLRLRLLQRGVAAFDPSRPKSTGHEGKKQKQGSTGNEWNKQQQGSTGHEGNKQLQGSVIMQLRERFDTRDEQRISSLKEITTIHCKKHTQNTVSQTNAGVKKEGNLSCGFEARNDDPKETIEESSSKVDQNANEMVDEVEARDQQLYDTIETDYNEILEEKECSDYNYDETSASYDWISPISRPKSYWEELRQEWYREMLDFGSGNDERRELLQRKTVSTVLCSDFREKMDKLMKSHVGTQTHLVNNQHDEEDQEENMEKLMAFYRDRLRVRGSPEEDGKDRNEKEVSEEDECINSGSDHELNDCHSGSDHELGDCHSSSSIHTPSSTTWSYRDTDGGDDSARAAFVSSPLHSQSQPFYQDSRQYSSPANQSSIEMEIIYDLRGQMVLLFQEMSELRKTLKNCTDMQMQMQLQQSQNQEVHKVKGKKCSNKKSKKGNCCICNENKVNSVLYRCGHMCACLKCAKELQWKSGKCPICQVEIIDVVKVHTNT 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04242 812 CDD mRING-HC-C3HC5_NEU1 759 808 - -
Trre8g04242 812 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 733 810 IPR013083 -
Trre8g04242 812 SUPERFAMILY RING/U-box 759 805 - -
Trre8g04242 812 PANTHER BNAC05G24000D PROTEIN 440 811 - -
Trre8g04242 812 MobiDBLite consensus disorder prediction 354 378 - -
Trre8g04242 812 MobiDBLite consensus disorder prediction 105 135 - -
Trre8g04242 812 ProSiteProfiles Zinc finger RING-type profile. 760 799 IPR001841 -
Trre8g04242 812 MobiDBLite consensus disorder prediction 335 378 - -
Trre8g04242 812 MobiDBLite consensus disorder prediction 591 639 - -
Trre8g04242 812 Pfam Zinc finger, C3HC4 type (RING finger) 757 804 - -
Trre8g04242 812 MobiDBLite consensus disorder prediction 640 657 - -
Trre8g04242 812 MobiDBLite consensus disorder prediction 591 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04242 Trre-Chr8 46961419 46964684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04242 760 812 C3H Transcription Factor Family AT3G06140 37.736 7.95e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04242 - - mtr:25493454 998.423