Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04240 ATGAAGACTTCAACATTTCTTATAGTAGTTTTACTCCTTGTGTGTTTCATTTCAATGCCATTTCTAATAGTCCTTGGCCAAGAAAATTTAGATAAAGATACAACTTTGAGAATACTTTTGGAAGTGAAGAAATCTTTTGTCCAAGACCCAGAAAATGTTTTGACTGATTGGTCAGAAGATAACACAGATTACTGTAGTTGGAGAGGTGTTTCATGTGGTTTGAATTCTTTGGTTGATGACTCGGTGAATGTAGTTGGACTCAATCTTTCTGACTCGTCACTCACTGGGTCAATATCACCTGAACTCGGTCGTTTGAAAAACTTGCTCCACCTTGATCTTTCTTCAAATAATCTTGTGGGTCCCATTCCAACAAATCTCTCTAACCTTGTTTTATTGGAATCTCTGCTTCTTTTTTCTAACCAACTCAATGGTTCTGTTCCTACTGAGTTTGGCTTGCTCACGAGTCTCCGAGTCATGCGACTCGGTGACAATGGGTTAACCGGTATGATTCCTGCATCTCTTGGGAAATTGGATAACTTGGTCAGTCTTGGTCTAGCTTCATGTGAACTCACTGGGTCGATTCCACGTGAACTCGGTCAACTCAGTCTCTTGGAGAATCTTGTTCTGCAGGACAACGAGTTGATGGGTCCGATTCCGTCTGAGTTAGGAAACTGCTCAAGCCTCACTGTCTTCACTGCTGCAAACAACAAACTCAATGGCTCAATTCCTAGTGAACTCAGTCAACTCAAGAATTTACAGCTTCTCAACCTTGGCAACAATAGTCTAACAGGGGAGATACCGAGTCAACTCGGTGATATGAGTGAACTCGTTTACCTCAATTTCATGGGGAACCAGCTTGAGGGCACAATTCCATCGTCTCTAGCTCAACTGGGTAATCTTCAAAATCTTGACTTGTCTATGAACAAACTCAGTGGAGGAATTCCTGAAGAGTTTGGCAACATGGATCAGCTAGGTTTCATGGTTCTGTCTGGTAACAACCTTAATAGTGTCATACCAAAAACAATATGTTCCAATGCAACAAATTTGGAACATTTGATGTTATCAGATAGTGGACTTTATGGTGAGATTCCAGCTGAATTGAGTCAATGTCTGTCACTGAAACAACTTGACTTGTCTAACAATTCACTCAATGGTTCCATACCTCTTGAGCTTTATGGAATGGTGGAGTTAACTGATCTGTTGCTAAACAACAATAGTTTGGTTGGTTCAGTCTCTCCTTTTATAGGGAACTTCAGCAATTTGCAGACACTTGCTTTGTATCACAACAATTTGAAGGGTGATCTTCCTAAAGAGATAGGAATGCTTGGGAAGTTGGAAATTTTATATCTTTATGATAATAGATTATCAGGGTCTATACCTATGGAGATTGGTAACTGTTCCAGCTTGCAAATGATTGATTTCTTTGGAAACAGTTTCAAGGGGGAAATTCCCATCACTATTGGAATGCTGAAAGAGTTGAATTTCCTTCACCTTAGGCAGAATGAGCTTGTTGGTGAGATTCCTGCCACCTTGGGGAACTGTCAAAAACTGAATATCCTTGATTTGGCTGACAATCAGCTCTCTGGTGCAATTCCTGCAACATTTGGATTCCTCGAGTCGTTGGAGAAGCTCATGCTCTACAACAATTCTCTTGAAGGTAACCTTCCTCGCCAATTGATAAATGTAGCAAACTTGACTAGAGTGAATCTTTCCAAGAATAGGTTTAATGGTAGTCTAGTGGCATTGTGTAGCTCGAAATCGTTTCTTTCTTTCGATGTTACCGACAATGAGTTTGATGGCGAAATTCCGCCTCAACTGGGAAACTCACCCTCCCTTTATAGGCTAAGATTAGGCAACAATAAATTTTCTGGTGAAATTCCAAGGACATTGGGAAAAATCCACGATCTGACATTGTTAGACCTGTCAGGCAATTCGCTTACCGGACCAATACCAGCTGAGCTTTCTTTGTGCAATAAACTGACTTACATTGATTTAAACAGTAATCATCTTTATGGACAAATACCATCATGGCTTGGAAGTTTGCCACAATTGGGAGAGATTAAGCTCTCCTCCAATAATTTTTCGGGAACTCTTCCATTAGGCCTATTCAAATGTTCCAAATTATTAGTTCTCTCTCTAGATGACAACTTTCTCAATGGAAGTCTCCCAGCTGATATAGGTGGTCTTGCATATCTTACTGTCCTCCGACTTGACCGTAATAAGTTCTCCGGAGCGATCCCTCCAGAGGTAGGAAAGCTGAGCAAGCTTTATGAGCTCCAGCTCTCCAGGAATAACTTCAATGGTGAGATGCCAATTGATATTGGAAAACTTCAAAATCTACAAACCATTTTAGACCTCAGTTACAATAATCTCTCAGGTGACATACCACCTTCTCTAGGGACTATGTCAAAATTAGAAACACTTGATCTTTCCCACAATCAACTTACTGGAAAAATCCCTCCACAAGTTGGTGAAATGAGCAGTTTGGAAAAGCTTGATCTCTCTTACAACAACCTTCAAGGGAAATTGGACAAAAAGTTCTCCCGGTGGCCAGATGAGGCATTTGAAGGGAACCTACATCTTTGTGGAAGCTCTCTCGACCGATGCGACAGTGATGATACTTCCGGCAGTGAGCATTCGGGCCTAAGTGAGTCATCAGTGGTGATAATATCTGTCCTTTCAACTTCGGCTGCAGTTGCACTATTGATACTTTCAGTAAGAATCTTCTGCAAAAACAAGCAAGATTATTTAAGGCAAGACAGCAAAGTGACTTCTTATGTCTACTCTTCCTCTTCATCACAAGCGCAGAGACGGCCATTGTTCCAGCTAAGAGCTGCTGGAAAGAGGGATTTCAATTGGGAAGATATCATGGATGCAACAAACAATCTAAACGACGACTTCATGATTGGTTCGGGAGGTTCAGGGAAAATCTACAAAGCTGAATTGGCCACTGGAGAAACAGTTGCTGTCAAGAAGATTTCATCAAAAGACGATTTTCTGTTAAACAAAAGCTTCTTAAGAGAAGTTAATACACTGGGGAGAATAAAGCATAGACATTTGGTGAAACTAATAGGGTTCTGTAGCAATAGAAACACAGGAGTGGGTTGGAATCTGCTGATATATGAGTACATGGAAAATGGAAGTTTATGGGATTGGCTACATGGGAAACCAGGAAATGCGAGCAAATTAAAGAAGAGACTTGATTGGGAGACAAGGTTTAAAATTGCTGTGGGATTAGCTCAAGGAGTGGAGTACCTGCATCATGACTGTGCGCCAAAGATCATTCACAGAGACATCAAATCCAGCAACATATTGCTAGATTCCAAAATGGAGGCACACTTGGGAGATTTTGGACTAGCAAAAGCACTCATTGAAAGTTATGACTCTAATACCGAGTCGAATTCTTGTTTTGCTGGATCTTGTGGTTACATGGCACCAGAGTATGCGTTCTCCCTGCGCTCGACAGAAAAAAGTGATGTTTTCAGCATGGGAATAGTTCTTATGGAACTTGTTAGTGGTAAAATGCCAACAAGTGACTTTTTTGGAGCTGATATGGACATGGTGAGATGGATGGAGATGCATATTGATATGCATGGTTCTACCCGTGAGAAATTGATAGATCCTGAACTGAAACCTCTTTTCCCTAGTGAAGAGTTTGCTGCATTCCAAGTGCTTGAGATAGCCTTGCAATGCACGAAAGCTACACCACAGGAGAGACCGACTTCAAGGAAAGTATGTGATCTTCTCCTCCATGTATTCAGTCACAGAACAATGGACTTTGAGAAGATGAAATTGGATCATCACAAGTAA 3810 0.41 MKTSTFLIVVLLLVCFISMPFLIVLGQENLDKDTTLRILLEVKKSFVQDPENVLTDWSEDNTDYCSWRGVSCGLNSLVDDSVNVVGLNLSDSSLTGSISPELGRLKNLLHLDLSSNNLVGPIPTNLSNLVLLESLLLFSNQLNGSVPTEFGLLTSLRVMRLGDNGLTGMIPASLGKLDNLVSLGLASCELTGSIPRELGQLSLLENLVLQDNELMGPIPSELGNCSSLTVFTAANNKLNGSIPSELSQLKNLQLLNLGNNSLTGEIPSQLGDMSELVYLNFMGNQLEGTIPSSLAQLGNLQNLDLSMNKLSGGIPEEFGNMDQLGFMVLSGNNLNSVIPKTICSNATNLEHLMLSDSGLYGEIPAELSQCLSLKQLDLSNNSLNGSIPLELYGMVELTDLLLNNNSLVGSVSPFIGNFSNLQTLALYHNNLKGDLPKEIGMLGKLEILYLYDNRLSGSIPMEIGNCSSLQMIDFFGNSFKGEIPITIGMLKELNFLHLRQNELVGEIPATLGNCQKLNILDLADNQLSGAIPATFGFLESLEKLMLYNNSLEGNLPRQLINVANLTRVNLSKNRFNGSLVALCSSKSFLSFDVTDNEFDGEIPPQLGNSPSLYRLRLGNNKFSGEIPRTLGKIHDLTLLDLSGNSLTGPIPAELSLCNKLTYIDLNSNHLYGQIPSWLGSLPQLGEIKLSSNNFSGTLPLGLFKCSKLLVLSLDDNFLNGSLPADIGGLAYLTVLRLDRNKFSGAIPPEVGKLSKLYELQLSRNNFNGEMPIDIGKLQNLQTILDLSYNNLSGDIPPSLGTMSKLETLDLSHNQLTGKIPPQVGEMSSLEKLDLSYNNLQGKLDKKFSRWPDEAFEGNLHLCGSSLDRCDSDDTSGSEHSGLSESSVVIISVLSTSAAVALLILSVRIFCKNKQDYLRQDSKVTSYVYSSSSSQAQRRPLFQLRAAGKRDFNWEDIMDATNNLNDDFMIGSGGSGKIYKAELATGETVAVKKISSKDDFLLNKSFLREVNTLGRIKHRHLVKLIGFCSNRNTGVGWNLLIYEYMENGSLWDWLHGKPGNASKLKKRLDWETRFKIAVGLAQGVEYLHHDCAPKIIHRDIKSSNILLDSKMEAHLGDFGLAKALIESYDSNTESNSCFAGSCGYMAPEYAFSLRSTEKSDVFSMGIVLMELVSGKMPTSDFFGADMDMVRWMEMHIDMHGSTREKLIDPELKPLFPSEEFAAFQVLEIALQCTKATPQERPTSRKVCDLLLHVFSHRTMDFEKMKLDHHK 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04240 1269 SUPERFAMILY L domain-like 340 650 - -
Trre8g04240 1269 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 484 580 - -
Trre8g04240 1269 ProSitePatterns Protein kinases ATP-binding region signature. 969 992 IPR017441 GO:0005524
Trre8g04240 1269 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 203 274 - -
Trre8g04240 1269 SUPERFAMILY L domain-like 42 388 - -
Trre8g04240 1269 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 290 389 - -
Trre8g04240 1269 ProSiteProfiles Protein kinase domain profile. 963 1254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04240 1269 SMART LRR_sd22_2 442 457 - -
Trre8g04240 1269 SMART LRR_sd22_2 105 131 - -
Trre8g04240 1269 SMART LRR_sd22_2 802 834 - -
Trre8g04240 1269 SMART LRR_sd22_2 297 323 - -
Trre8g04240 1269 SMART LRR_sd22_2 538 564 - -
Trre8g04240 1269 SUPERFAMILY Protein kinase-like (PK-like) 947 1249 IPR011009 -
Trre8g04240 1269 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 924 1043 - -
Trre8g04240 1269 FunFam Uncharacterized protein 390 483 - -
Trre8g04240 1269 Gene3D Ribonuclease Inhibitor 230 393 IPR032675 -
Trre8g04240 1269 Pfam Protein kinase domain 968 1246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04240 1269 Pfam Leucine rich repeat 610 670 IPR001611 GO:0005515
Trre8g04240 1269 Pfam Leucine rich repeat 516 575 IPR001611 GO:0005515
Trre8g04240 1269 Pfam Leucine rich repeat 782 839 IPR001611 GO:0005515
Trre8g04240 1269 Gene3D Ribonuclease Inhibitor 484 581 IPR032675 -
Trre8g04240 1269 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 503 1248 - -
Trre8g04240 1269 Gene3D Phosphorylase Kinase; domain 1 922 1043 - -
Trre8g04240 1269 ProSiteProfiles Leucine-rich repeat profile. 804 826 IPR001611 GO:0005515
Trre8g04240 1269 SMART LRR_typ_2 681 705 IPR003591 -
Trre8g04240 1269 SMART LRR_typ_2 802 824 IPR003591 -
Trre8g04240 1269 SMART LRR_typ_2 490 514 IPR003591 -
Trre8g04240 1269 SMART LRR_typ_2 105 129 IPR003591 -
Trre8g04240 1269 SMART LRR_typ_2 297 320 IPR003591 -
Trre8g04240 1269 SMART LRR_typ_2 177 201 IPR003591 -
Trre8g04240 1269 SMART LRR_typ_2 249 273 IPR003591 -
Trre8g04240 1269 SMART LRR_typ_2 538 562 IPR003591 -
Trre8g04240 1269 SMART LRR_typ_2 153 176 IPR003591 -
Trre8g04240 1269 SMART LRR_typ_2 633 657 IPR003591 -
Trre8g04240 1269 SMART LRR_typ_2 729 753 IPR003591 -
Trre8g04240 1269 SMART LRR_typ_2 321 345 IPR003591 -
Trre8g04240 1269 SMART LRR_typ_2 442 466 IPR003591 -
Trre8g04240 1269 SMART LRR_typ_2 826 857 IPR003591 -
Trre8g04240 1269 SMART LRR_typ_2 777 800 IPR003591 -
Trre8g04240 1269 SUPERFAMILY L domain-like 617 850 - -
Trre8g04240 1269 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 581 873 - -
Trre8g04240 1269 SMART serkin_6 963 1254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04240 1269 PRINTS Leucine-rich repeat signature 802 815 - -
Trre8g04240 1269 PRINTS Leucine-rich repeat signature 373 386 - -
Trre8g04240 1269 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 32 198 - -
Trre8g04240 1269 Gene3D Ribonuclease Inhibitor 34 154 IPR032675 -
Trre8g04240 1269 Gene3D Ribonuclease Inhibitor 155 227 IPR032675 -
Trre8g04240 1269 Pfam Leucine rich repeat N-terminal domain 37 72 IPR013210 -
Trre8g04240 1269 Gene3D Transferase(Phosphotransferase) domain 1 1044 1267 - -
Trre8g04240 1269 Gene3D Ribonuclease Inhibitor 582 877 IPR032675 -
Trre8g04240 1269 Gene3D Ribonuclease Inhibitor 394 483 IPR032675 -
Trre8g04240 1269 FunFam Leucine-rich repeat receptor-like protein kinase 1044 1266 - -
Trre8g04240 1269 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1094 1106 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04240 Trre-Chr8 46950771 46954681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04240 39 706 Receptor kinase-like Gene Family AT1G17750 36.795 9.47e-99 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre8g04240 Pkinase 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04240 - - gmx:100801889 1991.08