Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04238 ATGAGTTCAGTGGCACCATATTCACTTGGGACTTGTCTCACCTCATTGCACCTCCAAAAACGTAACCATTCTTCTGCATCATCAACAACATGTTCTTCTGTTCAACAACCACCACTTCTTGTACAAAAGGAGAATCAATTAAAGAGAAGAGAAGCAATAGGCCTCTCCATGAGTTTTGGCCTTCTTCATTCTTTCTTACAACCTATAACACCTCTCACTGCAATAGCAGCAGAAGCAGTTCCGTGTGAATTAACAGTTTCTCCTTCAGGGCTATCTTTTTGTGATAAAGTTGTAGGCACTGGTTCTCAAGCTGTTAAGGGACAACTTATTAAGGCACATTATGTGGGGAGATTGGAGAATGGTAAAGTTTTTGATAGCAGTTACGATCGTGGCAAGCCACTTACGTTTCGCGTTGGTGTTGGAGAGGTTATCAAAGGATGGGATGAAGGCATTTTAGGAGGTGATGGAATTCCTCCAATGCTTACAGGAGGTAAACGTACATTGAAGCTTCCTCCGGAACTTGGATATGGTTCAAGAGGGGCTGGTTGTAGAGGAGGTTCATGTGTCATTCCTCCGGATTCAGTACTCTTATTCGATGTGGAGTTTGTTAGCAAAGCATGA 621 0.4283 MSSVAPYSLGTCLTSLHLQKRNHSSASSTTCSSVQQPPLLVQKENQLKRREAIGLSMSFGLLHSFLQPITPLTAIAAEAVPCELTVSPSGLSFCDKVVGTGSQAVKGQLIKAHYVGRLENGKVFDSSYDRGKPLTFRVGVGEVIKGWDEGILGGDGIPPMLTGGKRTLKLPPELGYGSRGAGCRGGSCVIPPDSVLLFDVEFVSKA 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04238 206 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 4, CHLOROPLASTIC 22 205 IPR044183 GO:0009507
Trre8g04238 206 Gene3D - 78 206 IPR046357 GO:0003755
Trre8g04238 206 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 107 206 IPR001179 GO:0003755
Trre8g04238 206 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 103 202 IPR001179 GO:0003755
Trre8g04238 206 SUPERFAMILY FKBP-like 84 204 - -
Trre8g04238 206 FunFam Peptidylprolyl isomerase 79 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04238 Trre-Chr8 46944931 46947262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04238 107 204 Calmodulin-binding Proteins AT5G48570 42.857 2.33e-17 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04238 K01802 - qsu:112039264 261.536