Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04225 ATGGATGATTTTGAAGGTAGCAACAAACAAAAGAAAAAGAATGCTTACAAGCCAGAACAACTAGCTAGGCTTGAACAAATGTATCGGCATTGTTCTTATCCTAATAATGTTCATGCTGTTCGACTTGGTGGGGATGCTGTGCTTGACTCAACAATTGTCCAGCAATGGCAACAAAATAAACTCAAGGAATCAACTGAGCAAGCTTCAAAAAACATTGTTGAGAAAAGTGTTCAAGACGTTATTACTCATGCGCCTGAAAAAAGTGTTCAAGATGTTATTACTCGTACACCTCAAAATGTTCTAGCTTACGAAGATATACTTTTCGGTGATGAAGATTTTTCGGATTCGCTTAATGAAGAAGATATCACTAAAACGATGGCTGAATTTGCTCGTGATTTGCCTAATGTTGATACTTCTAACAGCGCCACCGCAGAGAGGAATCCAATTGAAGGAAAAAGGATTGTGATGAAGCTTGGTGAAAGAATGTTAAAAATATTTCATGATGCATTGAATAATATGTCATCAAACAAAGATTTTCCAGAATTGAATACATTGGATCGTGATGGTGTAAGCGTAAATGTTCGAAAATGCCGAGATCCAGGCACTGAAAATGGCGCGATCCTCACTGCGAAATCCTCCTTTTGGCTTTCTTGCTCACCTGAGTATGCTTTCAATTTTTTGAAAGACAATAGTACAAGATTTCAGTGGGATATTCTATGTGAAGGTCATCATCCAGTGGAAGAACTTTACCGTATCACACATGGAACAAATCCTGGAAACATTACTTCCATTATTCGGACATTAAACCCTGAGGATGAAAATTTTAGGATATTACAACAGTGTTACACTCGTGGTATGGAATCTGGGTTGGTATATTGTACAATTGATACTGAAACAATAAATTGTGCAATACGCGGAGAGGATTGTTCGATGTTGCCTCAGCTTCCATCTGGTTTCACAATATCCGGCGGTGGTCGATCTTCCCATTATAATAAGGGAGAAGAAGCTGGCGGCTGGTCTGGAGGTTCGGTGGTAACTGTCGCGTACCAATTGTTGATCGGTAAACCGGCTGAAATTGATAATCCAAATCTAGATGCAGTGAAGAAAGTGAATAAACTTGTTACCTCAACGGTGAACAATATCAGGCATGCTTTGAAGTGTTTGGATTATTAG 1173 0.3896 MDDFEGSNKQKKKNAYKPEQLARLEQMYRHCSYPNNVHAVRLGGDAVLDSTIVQQWQQNKLKESTEQASKNIVEKSVQDVITHAPEKSVQDVITRTPQNVLAYEDILFGDEDFSDSLNEEDITKTMAEFARDLPNVDTSNSATAERNPIEGKRIVMKLGERMLKIFHDALNNMSSNKDFPELNTLDRDGVSVNVRKCRDPGTENGAILTAKSSFWLSCSPEYAFNFLKDNSTRFQWDILCEGHHPVEELYRITHGTNPGNITSIIRTLNPEDENFRILQQCYTRGMESGLVYCTIDTETINCAIRGEDCSMLPQLPSGFTISGGGRSSHYNKGEEAGGWSGGSVVTVAYQLLIGKPAEIDNPNLDAVKKVNKLVTSTVNNIRHALKCLDY 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04225 390 SUPERFAMILY Bet v1-like 161 354 - -
Trre8g04225 390 SUPERFAMILY Homeodomain-like 5 60 IPR009057 -
Trre8g04225 390 Gene3D - 5 72 - -
Trre8g04225 390 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 145 385 IPR042160 -
Trre8g04225 390 Pfam Homeodomain 11 60 IPR001356 GO:0003677
Trre8g04225 390 ProSiteProfiles 'Homeobox' domain profile. 7 67 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04225 Trre-Chr8 46808603 46811877 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04225 150 387 Homeobox Transcription Factor Family AT1G17920 38.272 1.35e-41 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre8g04225 Homeodomain 2.1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04225 K09338 - psat:127108302 337.035