Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04224 ATGCCAATGAGTTCAGGTTCAGGAGACAAGCAAGATATGCATGATCAAACTGGTTGCTTTGATCCCAACACAATGGATGAAGGTGTTGAAAACTCTCAGAAAGATTACAACACAAACCACAATAATATTAACCTTGAAGAGAGTTTCAAGCCTTCTGTGGAGGAACTCTCTTATCACAATCATCAACACCTTGAAGATGTTTCCACCTATACAAATGGTTTCACTCCTTCATCAGTAGACATTGAACAGCAAAATCTTGGTTTGAACATTGGGAGCTCTTACAACAACGATATGGATAACCATTTGGCGCACGAGGTGTATCAGAACTCGACTTGGGACCCTAGTGTTCAGGATATGGACTATACCAATCACGAACACCACCAACTATCTGAACAACAATATCAACAATTTGTTGAGACACAAAACCATAACCAAAGCTACAATCCCTCTAGCATACTAGACCCTTCTTACTCTTCACCGGATCTCCTTAACCTTCTCCGTTTACCTAGATGTTCAGCTTCATCTATGCTCACAACTCCATCCAACATTTGCTTGACAAACCCAACTCAAAAAGCACCTAACTTTCATAACTCGATGAGTTTTCTTGGAGACCTTCCAATAGGATCATCGGATAATACAAGTGGATCATCGGTTTTATATGATCCTCTATTTCCTTTGAACCTTCCTCCACAGCCACCAGCTCTTAGAGAATTGTTTCAGTCTCTCCCTCACGGCTATAGCATGCCGACAAGTTCAAGGAATGGTTCTCTTTTCGGTGGAGGAGATGAGATGGAGGGAGATGGAGACATGGGAGTGCTGGAATTCAATAGGGTCACTGCTTCTGTTGGCAAAGGAAGGGGAGGAAAAGCTACAAAACACTTTGCAACCGAGAAACAAAGAAGAGAGCAGTTGAATGGAAAGTACAAAATCTTGAGGAGTCTCATCCCAAATCCCACCAAGGTTGATAGAGCATCGGTGGTTGGAGATGCTATTGAGTATATAAGAGAACTGATTAGAACTGTGAATGAGCTGAAATTATTGGTGGAGAAGAAAAGGCATGGGAGGGACATGTGTAAGAGACTTAAAACTGAAGATGATGCTGCAGAAAGTTGTAACATAAAGCCTTTTGGTGATCCAGATGGAAGCATAAGGACCTCATGGCTGCAGAGGAAATCCAAAGACAGTGAGGTTGATGTCCGGATTATCGACGATGATGTTACAATCAAACTGTTTCAGAGGAAGAAGGTTAATTGTCTGCTGTTTGTATCCAAGGTTCTTGATGAACTTCAGCTGGAACTTCACCATGTTGCAGGTGGACATGTTGGTGAATATTGCAGTTTCTTGTTCAATAGCAAGGTAACTGAAGGTTCATCAGTTTATGCAAGTGCTATAGCCAACAGGGTGATTGATGTTCTTGACACTCAATATGCAGCAGGAGTTCCACATACAAGTAGGCTGTAG 1461 0.4196 MPMSSGSGDKQDMHDQTGCFDPNTMDEGVENSQKDYNTNHNNINLEESFKPSVEELSYHNHQHLEDVSTYTNGFTPSSVDIEQQNLGLNIGSSYNNDMDNHLAHEVYQNSTWDPSVQDMDYTNHEHHQLSEQQYQQFVETQNHNQSYNPSSILDPSYSSPDLLNLLRLPRCSASSMLTTPSNICLTNPTQKAPNFHNSMSFLGDLPIGSSDNTSGSSVLYDPLFPLNLPPQPPALRELFQSLPHGYSMPTSSRNGSLFGGGDEMEGDGDMGVLEFNRVTASVGKGRGGKATKHFATEKQRREQLNGKYKILRSLIPNPTKVDRASVVGDAIEYIRELIRTVNELKLLVEKKRHGRDMCKRLKTEDDAAESCNIKPFGDPDGSIRTSWLQRKSKDSEVDVRIIDDDVTIKLFQRKKVNCLLFVSKVLDELQLELHHVAGGHVGEYCSFLFNSKVTEGSSVYASAIANRVIDVLDTQYAAGVPHTSRL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04224 486 Pfam Helix-loop-helix DNA-binding domain 291 337 IPR011598 GO:0046983
Trre8g04224 486 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 288 337 IPR011598 GO:0046983
Trre8g04224 486 PANTHER TRANSCRIPTION FACTOR BHLH91 13 478 IPR045895 GO:0006355|GO:0048658
Trre8g04224 486 Gene3D - 286 363 IPR036638 GO:0046983
Trre8g04224 486 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 286 357 IPR036638 GO:0046983
Trre8g04224 486 SMART finulus 294 343 IPR011598 GO:0046983
Trre8g04224 486 MobiDBLite consensus disorder prediction 26 40 - -
Trre8g04224 486 CDD bHLH_AtMYC1_like 293 357 IPR045896 -
Trre8g04224 486 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04224 Trre-Chr8 46802682 46804497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04224 13 483 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 36.508 5.60e-88 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre8g04224 HLH 3.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04224 - - gmx:100782512 691.034