Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04212 ATGGCTGAAAATAATTCTCAATCTCCCATACCATGTAATAATGATCACAACCATGATCATGAACAAGTAGCAGGTTTTGATTGGATGGTTCTAGTAGCAGCTATTCTATGTGCCATTGTTTGTGCTCTTGGTCTTAACACTATGTTACAATGTGCTTTTCAATGTCTTGGTCGTGTAGTAACTGAACCTATGCAATGGATTGCTACTAGGAGGTTGAATTCAGGAATCAAGAAAAAAGAAATGGTAGCTTTGCCAACTTCAACATATTGTGATGATTTAGGTTCTCCATCTTCAGCTTCTAGTTGTGTTATTTGTTTGGCTGAATTCTGTAATGGAGATCAGATAAGGCATCTTACTCAAGTCTAG 366 0.3716 MAENNSQSPIPCNNDHNHDHEQVAGFDWMVLVAAILCAIVCALGLNTMLQCAFQCLGRVVTEPMQWIATRRLNSGIKKKEMVALPTSTYCDDLGSPSSASSCVICLAEFCNGDQIRHLTQV 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04212 121 PANTHER RING-H2 FINGER PROTEIN ATL78 9 119 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04212 Trre-Chr8 46676442 46676891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04212 1 120 C3H Transcription Factor Family AT1G76410 33.071 1.96e-12 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04212 - K19040 tpra:123918739 235.728