Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04198 ATGGCGCCGAGCATTCAACTAACTTCCGCCGGCGCCGGCAACGATTCCGACTCCGGCGACCTTGAAGATGTCCGCCTGTTAGATTCCTACGATAAACGTGATGTTGAAGACGGAACCAAACGGATTCAGGTTAGAATCTCCGGTATGACGTGCGCCGCTTGTTCCAACTCCGTTGAAGCCGCTCTCAAGTCCGTCGACGGCGTAATTGAAGCGTCCGTTGCTTTACTTCAGAATAAAGCCGATGTCGTTTTCAATAGAAACCTCGTCAAGGATGAAGATATTAAGAATGCAATTGAAGATGCAGGTTTTGAAGCTGAGATCTTACATGAACCGGGTTCAGTTGGACCGAAACCGGCTGGTGATAGTACGGTGGTTGGACAGTTTACGATTGGTGGTATGACTTGTGCGGCGTGTGTGAATTCCGTTGAGGGAATTTTAAAGGATATCACCGGAGTGAAAAAAGCTGTGGTGGCTTTAGCTACTTCATTGGGTGAAGTTGAGTTTGATCCAAATGTGATTAGTAAAGAAGAAATTGTTAGTGCAATTGAAGATGCTGGTTTTGAAGCTTCTTTTGTGCAGAGTACCAGTCAAGATGAGATTGTTTTAGGTGTTGTTGGTTTGGTTGATGTTCAGGTTTTGGAGAGTATGTTAAAAGGTTTTAAAGGGGTTAGGCAGTTTCGGTTTGATCCTTTGTTGAGTGAACTTAATGTTGTTTTTGATCCTCAAGTTCTTAGTTCTAGATCATTGTTTGATGGGATTTCTGCAGTTAGTAATGGCATGTTTGAGTTGCATGTTAGAAGTCCTTATGCTAGAATGGCTTCTAAAGATGGATCAGAGAGTGCAACTATGTTTCGACTTTTTACTTCCAGCTTGTTTCTTAGTATTCCTCTCTTCTTCATGGGGGTAATTTGTCCTCATATTCCATTCATATACTCTTTATTACTTTGGAGATGCGGGCCTTTCCTCATGGATGATTGGTTGAAGTGGGCATTGGTGAGTGTCATCCAATTTGTGATCGGAAAGCGTTTCTACATAGCAGCTTACAGAGCTCTTAGAAATGGTTCAACAAACATGGATGTCCTGGTTGCTTTGGGAACTACGGCATCATATGTTTATTCTGTCTGTGCTCTTCTGTATGGTGCTCTTACTGGATTTTGGTCTACAACATACTTTGAAACAAGTGCTATGCTTATAACATTTGTATTGTTGGGCAAATATTTGGAATGTCTTGCCAAAGGAAAGACATCTGATGCCATTAAGAAGTTAGTAGAACTCACTCCTGCAACAGCTCTGTTGGTTGTTAAAGACAAAGATGGTAAATCTATTAAGGAAAGAGAAATAGACTCCCTGCTTATTCAACCTGGTGACACATTAAAAGTTCTTCCTGGTACAAAGATTCCCGCTGATGGCATTGTTAGCTGGGGCTCAAGTTACGTGAATGAGAGTATGGTGACCGGTGAAGCTATACCTGTTTTGAAGGAGATCAATGCATCTGTTATTGGAGGTACAATCAATTTCCATGGCGTCCTTCATATTCAAGCTACCAAAGTAGGATCCGATACAGTTTTGAGTCAGATAATTAATTTGGTGGAGACAGCCCAGATGTCCAAAGCTCCCATTCAAAAGTTTGCTGATTATGTAGCAAGCATATTTGTTCCTACAATTGTAGCTCTGTCATTATTGACACTATTATGTTGGTATACTGCTGGGGCTCTTGGAGCTTACCCGGATGAATGGCTGCCGAAAAATGGAAATCACTTCGTTTTTGCTCTTATGTTTTCTATATCTGTTGTGGTGATTGCATGCCCATGTGCACTTGGTTTGGCAACACCAACTGCTGTCATGGTGGCAACAGGGGTTGGGGCAAACAATGGTGTGTTAATTAAAGGAGGAGAATCCTTAGAAAGGGCTCAGATGGTGAAGTATGTTATATTTGATAAAACAGGAACTCTAACTCAGGGTAAAGCCACTGTTACTGCTGCCAAGGTGTTTGCCGGAATGGACCGTGGAGAATTTCTTAAATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACACCCGCTGGCAAAAGCGATATTACAATATGCACGCCATTTTCATTTCTTTGATGGGTCCTCTCTTACCAATGGTTCCCAAAATGATGCCAATGAGTTAAAATCAGGGTGGCTTTATGATGCCTCAGACTTCTGTGCTATTCCAGGAAGGGGCGTGCAGTGCGTTGTAGATGGACAGCGTATTTTGGTTGGTAACAGGAAGCTGCTGGAGGAAAATGGCATAAATATTTCTACTGAAGTGGAAAGTTTTGTTGTAGAGCTTGAAGAGAGTGCCAAGACTGGGATCCTTGTAGCATGCAATGATATATTGATTGGAGTCTTGGGCGTCGCAGACTCACTCAAGCGAGAAGCCTTTGTTGTTATAGAGGGCCTTCAGAAAATGGGAATCACACCTGTTATGGTTACAGGAGATAACTGGAGAACAGCTCGAGCTGTTGCCAAGGAGGTTGGCATTCAAGATGTTAGGGCAGAGGTTATGCCTGCAGGAAAGGCTGATGTTGTTCGTTCATTCCAAAAAGATGGAAGTATAGTTGCAATGGTGGGTGATGGTATAAACGACTCTCCTGCATTAGCTGCTGCAGATGTTGGTATGGCAATTGGAGCTGGAACAGATATTGCAATAGAAGCTGCTAATTATGTGTTGATGAGAGATAATTTGGAAGATGTGATCACAGCTATTGATCTTTCTAAGAAGACCTTTTCTCGTATTCGATTGAATTATGTATTTGCGATGGCCTACAATGTTATCGCGGTACCTGTTGCTGCAGGGGTTTTATTTCCTTCACTGGGGATCAAGCTTCCACCATGGGTTGCTGGTGCATGCATGGCTCTCTCGTCTGTTAGTGTTGTATGTTCTTCTTTGCTGCTTAGAAGATATAGAAAACCCATACTTACTACAATACTCCATGAAATAGTTGTAAATTAA 2976 0.4251 MAPSIQLTSAGAGNDSDSGDLEDVRLLDSYDKRDVEDGTKRIQVRISGMTCAACSNSVEAALKSVDGVIEASVALLQNKADVVFNRNLVKDEDIKNAIEDAGFEAEILHEPGSVGPKPAGDSTVVGQFTIGGMTCAACVNSVEGILKDITGVKKAVVALATSLGEVEFDPNVISKEEIVSAIEDAGFEASFVQSTSQDEIVLGVVGLVDVQVLESMLKGFKGVRQFRFDPLLSELNVVFDPQVLSSRSLFDGISAVSNGMFELHVRSPYARMASKDGSESATMFRLFTSSLFLSIPLFFMGVICPHIPFIYSLLLWRCGPFLMDDWLKWALVSVIQFVIGKRFYIAAYRALRNGSTNMDVLVALGTTASYVYSVCALLYGALTGFWSTTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELTPATALLVVKDKDGKSIKEREIDSLLIQPGDTLKVLPGTKIPADGIVSWGSSYVNESMVTGEAIPVLKEINASVIGGTINFHGVLHIQATKVGSDTVLSQIINLVETAQMSKAPIQKFADYVASIFVPTIVALSLLTLLCWYTAGALGAYPDEWLPKNGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGESLERAQMVKYVIFDKTGTLTQGKATVTAAKVFAGMDRGEFLKLVASAEASSEHPLAKAILQYARHFHFFDGSSLTNGSQNDANELKSGWLYDASDFCAIPGRGVQCVVDGQRILVGNRKLLEENGINISTEVESFVVELEESAKTGILVACNDILIGVLGVADSLKREAFVVIEGLQKMGITPVMVTGDNWRTARAVAKEVGIQDVRAEVMPAGKADVVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAANYVLMRDNLEDVITAIDLSKKTFSRIRLNYVFAMAYNVIAVPVAAGVLFPSLGIKLPPWVAGACMALSSVSVVCSSLLLRRYRKPILTTILHEIVVN 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04198 991 Gene3D - 745 795 IPR023299 GO:0000166
Trre8g04198 991 Gene3D - 651 744 IPR023299 GO:0000166
Trre8g04198 991 Gene3D - 126 191 - -
Trre8g04198 991 MobiDBLite consensus disorder prediction 1 15 - -
Trre8g04198 991 SUPERFAMILY Calcium ATPase, transduction domain A 444 530 IPR008250 -
Trre8g04198 991 Gene3D - 611 921 IPR023214 -
Trre8g04198 991 FunFam Copper-transporting ATPase 1, putative 412 534 - -
Trre8g04198 991 NCBIfam copper ion binding protein 127 189 IPR006122 GO:0005507
Trre8g04198 991 NCBIfam copper ion binding protein 42 105 IPR006122 GO:0005507
Trre8g04198 991 SFLD C1.7: P-type atpase like 626 915 - -
Trre8g04198 991 SUPERFAMILY HMA, heavy metal-associated domain 36 110 IPR036163 GO:0046872
Trre8g04198 991 PRINTS H+-transporting ATPase (proton pump) signature 864 880 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre8g04198 991 PRINTS H+-transporting ATPase (proton pump) signature 836 852 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre8g04198 991 PRINTS H+-transporting ATPase (proton pump) signature 895 920 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre8g04198 991 ProSiteProfiles Heavy-metal-associated domain profile. 40 106 IPR006121 GO:0046872
Trre8g04198 991 ProSiteProfiles Heavy-metal-associated domain profile. 124 190 IPR006121 GO:0046872
Trre8g04198 991 Gene3D - 39 110 - -
Trre8g04198 991 Pfam E1-E2 ATPase 425 623 - -
Trre8g04198 991 FunFam Copper-exporting P-type ATPase 744 795 - -
Trre8g04198 991 SUPERFAMILY Calcium ATPase, transmembrane domain M 381 953 IPR023298 -
Trre8g04198 991 SUPERFAMILY HAD-like 643 970 IPR036412 -
Trre8g04198 991 CDD HMA 127 190 IPR006121 GO:0046872
Trre8g04198 991 FunFam Copper-exporting P-type ATPase A 38 108 - -
Trre8g04198 991 FunFam Copper-transporting ATPase RAN1 651 743 - -
Trre8g04198 991 Pfam haloacid dehalogenase-like hydrolase 640 878 - -
Trre8g04198 991 ProSitePatterns E1-E2 ATPases phosphorylation site. 646 652 IPR018303 -
Trre8g04198 991 MobiDBLite consensus disorder prediction 1 22 - -
Trre8g04198 991 Pfam Heavy-metal-associated domain 44 104 IPR006121 GO:0046872
Trre8g04198 991 Pfam Heavy-metal-associated domain 128 188 IPR006121 GO:0046872
Trre8g04198 991 NCBIfam HAD-IC family P-type ATPase 397 665 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre8g04198 991 NCBIfam HAD-IC family P-type ATPase 735 947 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre8g04198 991 CDD P-type_ATPase_Cu-like 285 960 - -
Trre8g04198 991 PRINTS P-type cation-transporting ATPase superfamily signature 480 494 - -
Trre8g04198 991 PRINTS P-type cation-transporting ATPase superfamily signature 789 800 - -
Trre8g04198 991 PRINTS P-type cation-transporting ATPase superfamily signature 811 821 - -
Trre8g04198 991 PRINTS P-type cation-transporting ATPase superfamily signature 887 899 - -
Trre8g04198 991 PRINTS P-type cation-transporting ATPase superfamily signature 644 658 - -
Trre8g04198 991 PRINTS P-type cation-transporting ATPase superfamily signature 864 883 - -
Trre8g04198 991 NCBIfam heavy metal translocating P-type ATPase 358 973 IPR027256 GO:0006812|GO:0016020|GO:0019829
Trre8g04198 991 ProSitePatterns Heavy-metal-associated domain. 130 159 IPR017969 GO:0046872
Trre8g04198 991 FunFam Copper-exporting P-type ATPase A 123 192 - -
Trre8g04198 991 Gene3D - 412 534 - -
Trre8g04198 991 CDD HMA 43 106 IPR006121 GO:0046872
Trre8g04198 991 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 22 980 - -
Trre8g04198 991 SUPERFAMILY HMA, heavy metal-associated domain 121 194 IPR036163 GO:0046872
Trre8g04198 991 SFLD p-type atpase 626 915 IPR044492 -
Trre8g04198 991 ProSitePatterns Heavy-metal-associated domain. 46 76 IPR017969 GO:0046872
Trre8g04198 991 FunFam Probable copper-transporting ATPase HMA5 770 921 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04198 Trre-Chr8 46590433 46595865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04198 1 985 Primary Pumps ATPases AT5G44790 72.637 0.0 1454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04198 K17686 - gmx:100778219 1630.54