Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04167 ATGGCCGACGATGAACCAATGCCTACTCGCTGGTCTTTTCAGGAGTTCAAAACGTATTATGATGTTAGGCTTGGTAGGAAGAAATTGGTGGAGAAGAATGGTGAGACTGCTGATAATGCCGTCAGCAATGGAAATTCTTCTGGCATTGCATCAAATGGTAATTTTCATGGTAAAAAAACGTCGGATAAAGCTATTTATGAGCAGTTCCAAAGCCAGGGGCAGAATCTGACGCACACAAATGGTTTTGCATCAAACAATGTTGATGAAATACCGCAGAAGTCTTTGCTTCCACCTTTTGAATCTGCAGAAATGCGTACTTTAGCAGAGAGCTTAAGTAGGGATATCATTCGTGGGAGTCCAAATGTGAAGTGGGAAAGCATCAAGGGGTTAGAGAATGCCAAACGTTTACTGAAAGAAGCTGTAGTGATGCCGATTAAGTATCCCAAGTACTTTAAGGGTCTGTTATCACCGTGGAAGGGCATTCTCCTTTTTGGCCCCCCAGGGACAGGAAAGACAATGCTTGCAAAGGCAGTTGCAACAGAGTGCAACACTACATTTTTTAATATTTCAGCATCGTCTGTTGTCAGCAAATGGCGAGGTGATTCAGAGAAGTTAATAAAGGTGTTATTTGAGCTTGCAAGGCATCATGCACCTGCAACAATATTTCTGGATGAAATTGATGCAATCATCAGTCAACGTGGTGAGGCACGCAGTGAACACGAAGCAAGCAGACGGTTAAAAACTGAACTACTCATTCAGATGGATGGTTTAACGCGGACAGAAGAACTTGTTTTTGTTTTGGCGGCGACAAATCTTCCCTGGGAATTGGATGCTGCCATGCTTAGACGTCTCGAGAAGCGAATCCTTGTACCACTTCCAGAACCAGAAGCAAGAAGAGCAATGTTTGAGGAACTTCTTCCTCCGCAGACTGATGAGGAACCGATCCCCTATGATTTACTTGTGGATCGGACAGAAGGATATTCAGGCTCGGATCTCCGCCTGCTTTGTAAAGAAACTGCAATGCAGCCATTGAGACGCTTAATGTTACAACTCGAACAGGAACAAGATGTGGTGCCTGAAGAAGAGCTGCCAAAAGTTGGGCCAGTCAGGCCTGAAGACGTAGAGACAGCTTTAAGGAACACACGGCCATCTGCTCATCTCCATGCCCACAAATACGACAAGTTTAATTCTGATTATGGTAGTCAAATACTTCAATGA 1218 0.4417 MADDEPMPTRWSFQEFKTYYDVRLGRKKLVEKNGETADNAVSNGNSSGIASNGNFHGKKTSDKAIYEQFQSQGQNLTHTNGFASNNVDEIPQKSLLPPFESAEMRTLAESLSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFKGLLSPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPATIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTRTEELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARRAMFEELLPPQTDEEPIPYDLLVDRTEGYSGSDLRLLCKETAMQPLRRLMLQLEQEQDVVPEEELPKVGPVRPEDVETALRNTRPSAHLHAHKYDKFNSDYGSQILQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04167 405 SMART AAA_5 157 294 IPR003593 GO:0016887
Trre8g04167 405 FunFam Katanin p60 ATPase-containing subunit A-like 2 120 304 - -
Trre8g04167 405 Pfam ATPase family associated with various cellular activities (AAA) 161 291 IPR003959 GO:0005524|GO:0016887
Trre8g04167 405 FunFam Katanin p60 ATPase-containing subunit A-like 2 293 381 - -
Trre8g04167 405 Gene3D - 120 395 IPR027417 -
Trre8g04167 405 PANTHER AAA DOMAIN-CONTAINING 58 401 - -
Trre8g04167 405 CDD RecA-like_VPS4-like 127 290 - -
Trre8g04167 405 Gene3D - 293 381 - -
Trre8g04167 405 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 386 IPR027417 -
Trre8g04167 405 Pfam AAA+ lid domain 318 354 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04167 Trre-Chr8 46310945 46317330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04167 155 364 Calmodulin-binding Proteins AT3G56690 36.620 1.55e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04167 K07767 - gmx:100794098 666.381