LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre8g04161	ATGTCGTCGAAGAGAAAGGTTAGAGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTGCTGTTAAAGATGGAGAACATGTTTTTGGTGTTGCTCGTATCTTTGCTTCATTCAATGATACCTTCATTCATGTCACTGATTTGTCTGGGAGAGAAACACTTGTCCGAATTACTGGTGGAATGAAGGTTAAAGCTGATAGAGATGAATCATCTCCATATGCTGCTATGCTTGCTGCACAAGATGTCGCTACAAGATGCAAGGAGCTAGGCATAACTGCTCTTCATATCAAGCTCCGTGCAACTGGAGGAAACAAGACCAAAACCCCAGGCCCTGGTGCTCAGGCTGCTCTACGTGCTTTGGCACGTTCAGGAATGAAAATTGGTCGCATAGAGGATGTGACCCCAATTCCTTCAGACAGCACACGCAGAAAGAGTGGTAGAAGGGGTAGAAGGCTCTGA	456	0.4605	MSSKRKVREPKEETVTLGPAVKDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVATRCKELGITALHIKLRATGGNKTKTPGPGAQAALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRGRRL	151

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre8g04161	151	FunFam	40S ribosomal protein S14	1	151	-	-
	Trre8g04161	151	PANTHER	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	4	144	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Trre8g04161	151	Gene3D	Ribosomal protein S11	1	151	IPR036967	GO:0003735\|GO:0005840\|GO:0006412
	Trre8g04161	151	MobiDBLite	consensus disorder prediction	130	151	-	-
	Trre8g04161	151	Pfam	Ribosomal protein S11	29	147	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Trre8g04161	151	SUPERFAMILY	Translational machinery components	24	149	-	-
	Trre8g04161	151	Hamap	30S ribosomal protein S11 [rpsK].	4	148	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Trre8g04161	151	ProSitePatterns	Ribosomal protein S11 signature.	116	138	IPR018102	-
	Trre8g04161	151	PIRSF	RPS11p_RPS11a_RPS14e_RPS11o	1	148	IPR001971	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre8g04161	Trre-Chr8	46249966	46251665	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre8g04161	3	140	Cytoplasmic Ribosomal Protein Gene Family	AT3G11510	89.855	1.61e-90	258

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre8g04161	K02955		-	gmx:100785807	258.84