Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04156 ATGTTACAAACAGGTGAAATTCCATTTTCCCTCTTCAACATCTCTTCTTTGATAGTTATCAACCTTGACAAAAACAACTTAAATGGAATTCTTCCACATGATATGTGTCATCAATTTCCTCAACTTCAAATGTTTACTTTGCACACTAATGATTACAGTGGAATCATTCCACGATCAATTGGAAACTGCACATCTTTACAATATTTCAGTTTAGCTGATAACTTTTTTGAAGGTTCGATACCAATGGAGATTGGCCATCTCAATCAACTCCAAGTTCTGCAATTGTCAAATAACAGCTTGAGTGGACCTATTCCTTCAAAACTCTTCAACATTTCAACATTGGAAGTTTTGATTCTACAAATAAATTTTTTCTCCGGCATACTTCCATCAAACATGGGATTTGGTCTTCCTAACCTACAACGCCTACAAATATATGAAAACAACTTTGTTGGAAAATTTCCAGACAGTATATCAAATGCTTCAAATCTCGCCGTACTTGACATGAGTGATAATGAATTTAGTGGAGTTATGCCCAATTCTTTTGGAGATTTAACACTCATCGAATTCCTCGGCATAGCTGGTAATAATTTGACATTAAATGATGATTCTCTTGAAATAAACTTCCTTACTTCACTTACTAGTTGCACATATCTTACATATCTTGATGTGTCAGAGAATATGTTATCAAAACTTCCCAAGTCCATTGGAAACTTATCATTAGAAAATTTTCTAGCAGATTCTTGTGGAATTAATGGAAATATTCCGCTAGAAATCGGAAACATGAGCAACCTCATTCAATTATCTCTAGGTATGAATGGTTTAAATGGACCAATACCTAGTACAATCAAAGGTTTACATAATCTTCAATCTTTGAATCTTGAATACAATAGACTGCAAGGATCTATAATTCATGAGCTTTGTGAAGTTAGTAGTTTGAGTGAGTTGTATTTAACAAGCAATAAGCTCTTTGGTGTGTTACCAACATGTTTGGGAAAAATGACTTCTCTTAGAAAGTTTCACATTGGATCAAATAAGTTTACTTCAATGGTACCTTTCTCTTTTTGGAATCTTGAAGATATTTTAGAGGTAAACTTATCCTCTAATGCTTTAATCGGAAATCTTCCACTTGAGATTAAGAATTTAAGAGCTCTTGTACTATTAGATCTTTCAAATAATCAAATTTCAAGCAACATTCCAACAGCTATAAGTTTATTGAGAACTTTAGAAACTCTCTCCTTAGCAGATAACAAATTGAATGGTCTTATTCCAACATCACTTGGTGAAATGTTAAGTTTGAGTTTCTTGGACTTGTCACAAAATCTTATAACTGGTGTGATTCCAAAATCATTAGAGTCACTTTCTTCTCTTAAGTATATGAATCTATCATACAATAGATTGCAAGGAGAGATTCCTAATGGAGGATCTTTCAAAAGATTCACAGCTCAATCTTTCATGCATAACGACGCACTTTGTGGCAGTCCTCGCTTACGAGTACCTCCATGTGATAAAAAAATTAGAAAAAAATCAAAGACAAAGATGATATTAATCATTTGCATATCATCCATAATTTTTGTCTTAGGCATTTTGGTTGTTGCATGCATAATACTTCAGAGACATAAAAGGAAAAAAGTTGAAAATCCACTTAAAAGTGATTTGTCAACTAATTTAGGTGTTCCAAGAAGAATTTCTTACTATGAACTCATGAAAGCAACTAATGGATTCAGTGAAAGTAATTTACTTGGAAAAGGTGGCTTTGGATCTGTGTATCAAGGAATTCTTTCTAGTGGGAAGATGGTAGCGATTAAAGTACTTGACTCGACATCGGAAGCAACATCAAGAAGCTTTGATGCAGAATGTAATGCAATGCGCAACCTTCGGCATCGAAATCTTGTTCAAGTTATCAGTAGTTGTTCAAATGATGATTTCAAATCTTTAGTGATGGAGTTTATGTCAAATGGAAGTGTGGAAAAATGGTTATACTCAGAGAATTATTGTTTGGATTTCTTACAAAGGTTGAATATAATGATAGATGTGGCATCTGCATTGGAGTATCTACATCATGGTTCTTCAATACCAGTGGTTCATTGTGATTTGAAGCCTAGTAATGTTTTACTAGATGAAGATATGGTTGCACATGTTAGTGATTTTGGCATTTCCAAGCTCTTGGATGAAGGACAATCAAAAACTCATACACAAACTTTAGCCACTCTTGGTTATGTTGCACCAGAGTATGGATCTAAAGGAGTCATTTCAGTTAAAGGAGATGTGTATAGTTATGGGATAATGCTAATGGAAATGTTCACAGGAAAGAAGCCAACAAATGAAATGTTTTCAGAAGAATTAACCTTGAAAACTTGGATTAGTAAATCAATGGTCAATTCAGTTATGGAAGTTGTGGATTACAATTTAGTCTCACAACATGAGAAAGAACTTCATGAAATTTTAGCTTTAGCTTTGAGTTGTTGTGCAGATTCACCTGAAGCAAGAATTAAAATGACGGATGTAACTGCATCGTTAATCAAAATCAAGACCTCATTGTTGCAGTTAAAAAGGAAATAA 2559 0.3365 MLQTGEIPFSLFNISSLIVINLDKNNLNGILPHDMCHQFPQLQMFTLHTNDYSGIIPRSIGNCTSLQYFSLADNFFEGSIPMEIGHLNQLQVLQLSNNSLSGPIPSKLFNISTLEVLILQINFFSGILPSNMGFGLPNLQRLQIYENNFVGKFPDSISNASNLAVLDMSDNEFSGVMPNSFGDLTLIEFLGIAGNNLTLNDDSLEINFLTSLTSCTYLTYLDVSENMLSKLPKSIGNLSLENFLADSCGINGNIPLEIGNMSNLIQLSLGMNGLNGPIPSTIKGLHNLQSLNLEYNRLQGSIIHELCEVSSLSELYLTSNKLFGVLPTCLGKMTSLRKFHIGSNKFTSMVPFSFWNLEDILEVNLSSNALIGNLPLEIKNLRALVLLDLSNNQISSNIPTAISLLRTLETLSLADNKLNGLIPTSLGEMLSLSFLDLSQNLITGVIPKSLESLSSLKYMNLSYNRLQGEIPNGGSFKRFTAQSFMHNDALCGSPRLRVPPCDKKIRKKSKTKMILIICISSIIFVLGILVVACIILQRHKRKKVENPLKSDLSTNLGVPRRISYYELMKATNGFSESNLLGKGGFGSVYQGILSSGKMVAIKVLDSTSEATSRSFDAECNAMRNLRHRNLVQVISSCSNDDFKSLVMEFMSNGSVEKWLYSENYCLDFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDEDMVAHVSDFGISKLLDEGQSKTHTQTLATLGYVAPEYGSKGVISVKGDVYSYGIMLMEMFTGKKPTNEMFSEELTLKTWISKSMVNSVMEVVDYNLVSQHEKELHEILALALSCCADSPEARIKMTDVTASLIKIKTSLLQLKRK 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04156 852 Pfam Leucine rich repeat 311 370 IPR001611 GO:0005515
Trre8g04156 852 Pfam Leucine rich repeat 406 466 IPR001611 GO:0005515
Trre8g04156 852 Pfam Leucine rich repeat 137 197 IPR001611 GO:0005515
Trre8g04156 852 SMART LRR_typ_2 212 238 IPR003591 -
Trre8g04156 852 SMART LRR_typ_2 87 111 IPR003591 -
Trre8g04156 852 SMART LRR_typ_2 429 452 IPR003591 -
Trre8g04156 852 SMART LRR_typ_2 453 477 IPR003591 -
Trre8g04156 852 SMART LRR_typ_2 333 356 IPR003591 -
Trre8g04156 852 SMART LRR_typ_2 381 404 IPR003591 -
Trre8g04156 852 SMART LRR_typ_2 405 428 IPR003591 -
Trre8g04156 852 SMART LRR_typ_2 285 310 IPR003591 -
Trre8g04156 852 SMART LRR_typ_2 161 183 IPR003591 -
Trre8g04156 852 PANTHER OS04G0122200 PROTEIN 85 847 - -
Trre8g04156 852 Gene3D Transferase(Phosphotransferase) domain 1 650 850 - -
Trre8g04156 852 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 34 128 - -
Trre8g04156 852 ProSiteProfiles Leucine-rich repeat profile. 383 405 IPR001611 GO:0005515
Trre8g04156 852 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 211 505 - -
Trre8g04156 852 SUPERFAMILY RNI-like 135 472 - -
Trre8g04156 852 Pfam Protein kinase domain 575 836 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04156 852 ProSiteProfiles Protein kinase domain profile. 574 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04156 852 ProSitePatterns Protein kinases ATP-binding region signature. 580 602 IPR017441 GO:0005524
Trre8g04156 852 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 650 852 - -
Trre8g04156 852 Gene3D Phosphorylase Kinase; domain 1 557 649 - -
Trre8g04156 852 FunFam Serine-threonine protein kinase plant-type 554 649 - -
Trre8g04156 852 ProSitePatterns Serine/Threonine protein kinases active-site signature. 693 705 IPR008271 GO:0004672|GO:0006468
Trre8g04156 852 SMART serkin_6 574 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04156 852 SUPERFAMILY L domain-like 7 200 - -
Trre8g04156 852 Gene3D Ribonuclease Inhibitor 3 198 IPR032675 -
Trre8g04156 852 Gene3D Ribonuclease Inhibitor 199 510 IPR032675 -
Trre8g04156 852 SUPERFAMILY Protein kinase-like (PK-like) 555 839 IPR011009 -
Trre8g04156 852 SMART LRR_sd22_2 261 287 - -
Trre8g04156 852 SMART LRR_sd22_2 429 455 - -
Trre8g04156 852 SMART LRR_sd22_2 87 113 - -
Trre8g04156 852 SMART LRR_sd22_2 215 240 - -
Trre8g04156 852 SMART LRR_sd22_2 381 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04156 Trre-Chr8 46224693 46228601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04156 5 851 Receptor kinase-like Gene Family AT3G47570 37.514 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre8g04156 Pkinase 4.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04156 - K13420 mtr:25485995 1142.87