Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre8g04155 | ATGGATTTGAGCGAAGAAGTTAGACAAGCTCACAAGCGAGAATTCGCCGATTTCCTCGATCAAGATATCGGAAAAGGCATATACATGGACGAAATCAAAGCTCTAATCAACCACAAGCGCCACCGCCTCATCGTCAACATCTCCGATCTCCACAACTTCCGCGACTTGGGTAACAGAATTCTGAGAAATCCAAGTGAGTATATGCAATCATTTTGTGATGCGGTAACCGATGCTGCTCGTGCTATTGATCCTAAGTATTTGAAGGAAGGTGAACAAGTTCTTGTGGGATTTGAAGGTCCTTTTGTTTCTCGCCGAGTTACGCCTAGGGATCTTCTTTCTGAATTCATAGGCTCTATGGTTTGTGTTGAGGGCATTATCACCAAATGTTCTCTCGTAAGGCCAAAGGTTGTTAAAAGTGTTCATTTTTGCCCCACCACTGGCAACTTCACTAGCCGTGATTATCGAGATATTACATCTAATTTGGGTTTGCCCACAGGGTCTGTTTATCCCACAAGGGATGAAAATGGCAATTTACTTGTCACCGAGTATGGATTGTGCAAATACAAGGATCATCAAACCTTGTCAATGCAGGAAGTTCCTGAAAATTCTGCGCCTGGTCAGCTCCCAAGAACAGTGGATGTCATAGCAGAGGATGACCTTGTTGATTCTTGCAAGCCTGGAGATCGTGTCGCTATTGTCGGGATATATAAGGCTCTTCCAGGAAAAAGCAAAGGCAGTGTGAATGGTGTATTCAGGACTGTTCTCATAGCCAACAATGTATCTCTTCTCAACAAAGAGGCTAATGCTCCAATCTACAGCCCTGAAGACCTTAAAAACATTAAAAAGATAGCTGAAAGAGATGATACATTTGATCTTCTTGGTAATTCACTTGCACCTTCTATACATGGACATTCTTGGATAAAGAAAGCAGTGATTTTATTGATGCTTGGTGGAGTGGAGAAGAACTTAAAAAATGGCACTCATTTAAGAGGTGACATTAACATGATGATGGTTGGTGATCCCTCTGTTGCCAAGTCTCAACTCTTGAGAGCAATCATGAATATTGCCCCCTTGGCAATATCAACTACAGGTCGGGGTTCTTCTGGTGTTGGTTTGACAGCAGCAGTTACTTCAGATCAGGAAACAGGAGAAAGAAGGCTAGAAGCTGGGGCAATGGTTCTTGCTAACAGAGGTGTTGTCTGCATTGATGAATTTGACAAAATGAACGACCAAGATCGTGTAGCTATACATGAAGTTATGGAACAGCAGACTGTAACTATTGCTAAAGCTGGGATCCATGCATCACTTAATGCTCGTTGCAGTGTGGTGGCGGCTGCAAATCCCATATATGGAACTTATGATCGTTCACTGACTCCAACTAAAAATATTGGACTCCCAGACTCTTTGCTTTCTCGATTTGATCTCTTGTTTATCGTGTTGGATCAAATGGATCCTGATATTGATCGCCAAATATCAGAGCATGTCCTTCGTATGCATCGATTTCGTTCTGCCATTGATGGAGGTGAGGCAGCACATGATGGGAGTGCAAGATATGGAAGAGAAGAGGAAGCTGATACTGAATCATCTGTCTTTGTCAAATATAACAGAATGCTACATGGAAAGAAAACTGATAGAGGTCGCAAACGCGATACACTTACTATTAAGTTTCTTAAAAAGTATATCCATTATGCTAAGCATAGGATTCAACCTGACCTGACTGATGAGGCATCTGACCAGATTGCCACAGCATATGCTGAGCTCAGAAATGCAAATTCAAATGCGAAGACTGGAGGAACACTTCCAATAACTGCCAGAACTTTAGAAACCATAATACGTCTCTCAACTGCTCATGCCAAATTGAAGTTGAGCAGAAAGGTTTCAAAGTCTGATGTTGATGCTGCTTTGAAGATTCTTAATTTTGCAATATATCATAAAGAACTGACAGAAATGGATGAGCGTGAAGAAGCGAGGGAAAGAGAACTAGAGAGGAAGCGGAGGGCTGACGGTGAAAATAATGGTCCTGATCGTGGTTCTAAAAGTAAAAGAGACTCAACATCAGATGCCATGGAAGTAGACGATGTATCAGAAGCCCCCCAACCTGCTGTTGGGCTCACTCCTGAAAGAATCGAAGCATTCAATACCCTATTTGGTCAGCATATGCGTGCCAATCGCTTGGATCTCATATCTATTACAGACATAGAGGATGTTATCAATAGAGGGGCTGGTTCCACTTACAGCTCGGCAGATATATTGCTCCTGTTAGAGAAATTGCAAGAAGACAATAGATTGATGATAGTTGATGGAATGGTGCATATGGTATCATAG | 2325 | 0.4219 | MDLSEEVRQAHKREFADFLDQDIGKGIYMDEIKALINHKRHRLIVNISDLHNFRDLGNRILRNPSEYMQSFCDAVTDAARAIDPKYLKEGEQVLVGFEGPFVSRRVTPRDLLSEFIGSMVCVEGIITKCSLVRPKVVKSVHFCPTTGNFTSRDYRDITSNLGLPTGSVYPTRDENGNLLVTEYGLCKYKDHQTLSMQEVPENSAPGQLPRTVDVIAEDDLVDSCKPGDRVAIVGIYKALPGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIHGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLANRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRQISEHVLRMHRFRSAIDGGEAAHDGSARYGREEEADTESSVFVKYNRMLHGKKTDRGRKRDTLTIKFLKKYIHYAKHRIQPDLTDEASDQIATAYAELRNANSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVDAALKILNFAIYHKELTEMDEREEARERELERKRRADGENNGPDRGSKSKRDSTSDAMEVDDVSEAPQPAVGLTPERIEAFNTLFGQHMRANRLDLISITDIEDVINRGAGSTYSSADILLLLEKLQEDNRLMIVDGMVHMVS | 774 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre8g04155 | 774 | SUPERFAMILY | Nucleic acid-binding proteins | 13 | 259 | IPR012340 | - | |
| Trre8g04155 | 774 | ProSiteProfiles | MCM family domain profile. | 289 | 495 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre8g04155 | 774 | MobiDBLite | consensus disorder prediction | 651 | 689 | - | - | |
| Trre8g04155 | 774 | Gene3D | - | 109 | 239 | IPR012340 | - | |
| Trre8g04155 | 774 | Pfam | MCM P-loop domain | 277 | 499 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre8g04155 | 774 | ProSitePatterns | MCM family signature. | 398 | 406 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Trre8g04155 | 774 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 8 | 678 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre8g04155 | 774 | Gene3D | - | 271 | 663 | IPR027417 | - | |
| Trre8g04155 | 774 | Gene3D | - | 3 | 99 | - | - | |
| Trre8g04155 | 774 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 390 | 404 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre8g04155 | 774 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 442 | 454 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre8g04155 | 774 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 418 | 431 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre8g04155 | 774 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 469 | 477 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre8g04155 | 774 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 330 | 345 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre8g04155 | 774 | FunFam | DNA helicase | 5 | 104 | - | - | |
| Trre8g04155 | 774 | Pfam | MCM AAA-lid domain | 556 | 639 | IPR041562 | - | |
| Trre8g04155 | 774 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 299 | 645 | IPR027417 | - | |
| Trre8g04155 | 774 | Coils | Coil | 644 | 667 | - | - | |
| Trre8g04155 | 774 | Pfam | MCM OB domain | 109 | 239 | IPR033762 | - | |
| Trre8g04155 | 774 | CDD | MCM3 | 292 | 641 | - | - | |
| Trre8g04155 | 774 | FunFam | DNA helicase | 135 | 189 | - | - | |
| Trre8g04155 | 774 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 491 | 501 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Trre8g04155 | 774 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 630 | 645 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Trre8g04155 | 774 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 207 | 219 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Trre8g04155 | 774 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 458 | 468 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Trre8g04155 | 774 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 181 | 195 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Trre8g04155 | 774 | MobiDBLite | consensus disorder prediction | 651 | 703 | - | - | |
| Trre8g04155 | 774 | Pfam | MCM N-terminal domain | 12 | 83 | IPR027925 | - | |
| Trre8g04155 | 774 | SMART | mcm | 104 | 643 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre8g04155 | 774 | SMART | AAA_5 | 331 | 484 | IPR003593 | GO:0016887 | |
| Trre8g04155 | 774 | Gene3D | - | 135 | 189 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre8g04155 | Trre-Chr8 | 46213488 | 46218357 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre8g04155 | 1 | 575 | Core DNA Replication Machinery Family | AT5G46280 | 82.669 | 0.0 | 982 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre8g04155 | K02541 | - | gmx:100811545 | 1330.08 |