Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04153 ATGCAGACTCACGATTATTTTCATCCGGGAAAGGCGGTACTTCCTTTGGCAGATGAAGCCATTGGTACTTATATGAATGCTCCGCACACTTCTGCATTTAATGCAGCTTTACCTCCGGGTGTGAGGCAGATGACACCCTTTGAAAGGTTTAACTTGCAGCCCTCTGAGGTTTGCCCTAAGAATTTCATCGTCTTTGATCAAACGGATCAACAGAACAGGATTTTGTTCCATCCTGCGACAACCTACAAGTTTAACAGTCCTGGCTTCAACGCTCATGCTACTTATACTCAAGATTTTGAAAAGGATAAAATTAATCAAATGGAAAGGGAACTGTCATCTTCTTTTGAAGAGGACTCTAAGGACATTGATGCGTTGATGAGCCTAGACTCGGACGAACTAGAAAACTATGACGGCGAAGAAGTCAGCACAGCAAGGACTCATGAAAAAGATGACAGTACATCTGATACTTGCTCCAGTTATTGCACGAAATCAAGGAAGAAAAAGAGGTTATCATCTGTACAAAACTCTTCTGGGTCAAAGGCTTACTGTAACAGTGAAAAGAAACAACACCTAGAGATGAAGAGGATGGTGAAAATGTTGAGAAATATCGTGCCCGGTGGAGGCAACCAAATGGACACTGTTACCGTTTTGGACGAAGCTGTAAAATACCTCAAGACTCTCAAGGTTGAAGTGGAGCAATTTGGAATTGGACCATGA 717 0.424 MQTHDYFHPGKAVLPLADEAIGTYMNAPHTSAFNAALPPGVRQMTPFERFNLQPSEVCPKNFIVFDQTDQQNRILFHPATTYKFNSPGFNAHATYTQDFEKDKINQMERELSSSFEEDSKDIDALMSLDSDELENYDGEEVSTARTHEKDDSTSDTCSSYCTKSRKKKRLSSVQNSSGSKAYCNSEKKQHLEMKRMVKMLRNIVPGGGNQMDTVTVLDEAVKYLKTLKVEVEQFGIGP 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04153 238 Gene3D - 177 234 IPR036638 GO:0046983
Trre8g04153 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 227 IPR011598 GO:0046983
Trre8g04153 238 PANTHER TRANSCRIPTION FACTOR BHLH145 27 236 IPR037546 -
Trre8g04153 238 MobiDBLite consensus disorder prediction 127 158 - -
Trre8g04153 238 MobiDBLite consensus disorder prediction 138 154 - -
Trre8g04153 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 233 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04153 Trre-Chr8 46194774 46195490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04153 16 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G29950 39.167 1.10e-39 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04153 - - mtr:11405720 406.757