Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04146 ATGGGTCGTAGAAAAGTAAAGATGGAATATGTGAAAGACAAGGATAAGAGGTATGTGACATTTTCAAAGAGAAAGAATGGTATTTTCAAGAAAGCAAGTCAATTATCAACTCTTTGTAATGCTAGAGTTGGTGTGTTTGGATTCACCCCTGGTGGTAAACCATTTGCTTTTGGTTCTCCAAATTTTCAAGCTGTGACTGATGAGTTACTTCATGAAGTACAAGAGGAGCTTCAAAATGTGAAGGCAAGATTGAAAGAGCTTCATGGTGACATAGAGGCAGCATCATCTATGCTTATCCTTGCAAAGGAACCTAGATGA 318 0.3805 MGRRKVKMEYVKDKDKRYVTFSKRKNGIFKKASQLSTLCNARVGVFGFTPGGKPFAFGSPNFQAVTDELLHEVQEELQNVKARLKELHGDIEAASSMLILAKEPR 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04146 105 Coils Coil 70 97 - -
Trre8g04146 105 CDD MADS 2 60 - -
Trre8g04146 105 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre8g04146 105 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre8g04146 105 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre8g04146 105 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Trre8g04146 105 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Trre8g04146 105 PANTHER MADS BOX PROTEIN 3 83 - -
Trre8g04146 105 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Trre8g04146 105 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre8g04146 105 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04146 Trre-Chr8 46140497 46140944 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04146 1 87 Type I MADS-box Gene Family AT2G34440 50.000 2.75e-29 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre8g04146 SRF-TF 2.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04146 - - mtr:25493407 121.709