Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04141 ATGGTTCCTAAGAGGACATCAAATGGAAAACAAAAGCTAGAGATGAAGAAGATTGAGAAAAAGGATAATCTTTATGCATCATTTTCAAAGAGGAAGTTGAACATTTACAAAAAGTGTTCAGAGTTACCAACACTTTGTGGAGCTTCTGTTGATATTCTTATGTTTTCTCCAACTGGAAAACCATATTGTTATGGAAATCCTTCTTCTGAATCCATAACAAGAACTAGTTTGGGTAATGATAAAAAGTACTCTTCTATAGAAGAGTTATCAAATAGATTAATGATTGCAGAATATAATGCAAGAAATGATAATTTGGTTAATAAAATTAATGTAGCAAATGCTCATCATGAAGATTTGAAGAAGTTGACAAGTTCTACTACCTGGTGGTCGATCAATGAGCAAAATGTTGGTGACTACAATTATGATGAATTTGCACATGTTAAGAAGATCAAAATACCATTTGCTTTTGGTTCTCCATCTTTTCAAGCTGTGACTGATGAGTACCTTCATGAAGTACAAGGTGAATCATCAAATCAAAATGTTGAGAATAATGAAAATGGAAATCTCAACATTCTCAATGAACAATTTAAGGATGTGACCAAAGAGCTCAAGGAGATGAAAGCCGAAAAAGACAAAAATGGTAAAGTCCCTAATATTTCCCTTGATGATCTTACTTTAGAGGAGCTTCAAAATGTGAAGGCTAGATTGAAAGAGCTCCATGGTGACATAGAGGCAGCATCATCTATGCTTATCCTTGCAAAGGAACCTAGATGA 774 0.3385 MVPKRTSNGKQKLEMKKIEKKDNLYASFSKRKLNIYKKCSELPTLCGASVDILMFSPTGKPYCYGNPSSESITRTSLGNDKKYSSIEELSNRLMIAEYNARNDNLVNKINVANAHHEDLKKLTSSTTWWSINEQNVGDYNYDEFAHVKKIKIPFAFGSPSFQAVTDEYLHEVQGESSNQNVENNENGNLNILNEQFKDVTKELKEMKAEKDKNGKVPNISLDDLTLEELQNVKARLKELHGDIEAASSMLILAKEPR 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04141 257 Coils Coil 95 115 - -
Trre8g04141 257 PANTHER MADS BOX PROTEIN 10 129 - -
Trre8g04141 257 Gene3D - 21 91 IPR036879 GO:0003677|GO:0046983
Trre8g04141 257 SUPERFAMILY SRF-like 9 74 IPR036879 GO:0003677|GO:0046983
Trre8g04141 257 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Trre8g04141 257 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Trre8g04141 257 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Trre8g04141 257 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Trre8g04141 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Trre8g04141 257 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Trre8g04141 257 Coils Coil 189 209 - -
Trre8g04141 257 Coils Coil 226 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04141 Trre-Chr8 46115326 46118548 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04141 1 139 Type I MADS-box Gene Family AT1G28460 33.333 4.86e-19 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre8g04141 SRF-TF 5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04141 - K12412 mtr:25493407 99.7525