Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04139 ATGGGTCGTAGAAAAGTAAAGATGGAGTATGTGAAAGACAAGGATAAGAGGTATGTGACATTTTCAAAGAGAAAGAATGGTCTTTTCAAGAAAGCAAATCAATTATCAACTCTATGTAATGCTAGAGTTGCAGTGGTTGGATTCACCCCTGGTGGTAAACCATTTGCTTTTGGTTCTCCATCTTTTCAATCTGTGAGTGGTGAGTACCTTCATGAAGTACAAGGTGAATCATCAAACCAAAATGTTGAGAATTATGAAAATGGAAATCTCAACATTCTGAATGAACAACTTAATGATGTGACCAAAGAGCTGAAGGAGATGAAAACTAAAAAGGACAAAAATGGTAAAGTCCCTAATATTTCCCTTGATGATCTTACTTTAGAGGAGCTTCAAAATGTCAAGGCTAAATTGAAAGAGCTCCATGGTGACATTGAGGCAGCATCATCTATGCTTCTCCTTGCAAAGGAACCTAGATGA 477 0.3711 MGRRKVKMEYVKDKDKRYVTFSKRKNGLFKKANQLSTLCNARVAVVGFTPGGKPFAFGSPSFQSVSGEYLHEVQGESSNQNVENYENGNLNILNEQLNDVTKELKEMKTKKDKNGKVPNISLDDLTLEELQNVKAKLKELHGDIEAASSMLLLAKEPR 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04139 158 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre8g04139 158 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre8g04139 158 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre8g04139 158 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre8g04139 158 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Trre8g04139 158 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre8g04139 158 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Trre8g04139 158 CDD MADS 2 60 - -
Trre8g04139 158 Coils Coil 90 110 - -
Trre8g04139 158 PANTHER MADS BOX PROTEIN 3 143 - -
Trre8g04139 158 Coils Coil 127 150 - -
Trre8g04139 158 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04139 Trre-Chr8 46111378 46111854 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04139 1 155 Type I MADS-box Gene Family AT2G34440 40.116 7.28e-35 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre8g04139 SRF-TF 5.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04139 - - mtr:25493407 174.866