Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04134 ATGGCGAAAAAGTCTAAAGCCCCTCAAAAGAAGAACGCTGTTTCTCCAGCCTCCACCTCCACTTCCTCCTGTAAACTAGTGTTGGGGATTAAATCAAATGAGGGAATGAAGAGATCGGTGCGGCAGACTAAGTCAAGAGAGATGACCAAAGCTAAACAGAAAAAGATCAAACAAAAGATTGATGCTAAGAAGCCAAAGAAACCACCCACTGCTTTCTTCTACTTCTTGGAGGATTTTCGGAAAGAGTTTCAAGACCAGAATCCAGATGTAAAGTCAATGCGTGATATTGGCAAGGCATGTGGAGATAAATGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTATGATATAGCAACAGAAAAACGTGCAGAATTTGATAGAGCAACGACAGAGTATAACAAGAAAATGGAAAACGGCGATTTTGAAGAAACCGACGAGGAGTCAGAGTATGATGAGTAA 462 0.4069 MAKKSKAPQKKNAVSPASTSTSSCKLVLGIKSNEGMKRSVRQTKSREMTKAKQKKIKQKIDAKKPKKPPTAFFYFLEDFRKEFQDQNPDVKSMRDIGKACGDKWKTMTYEEKVQYYDIATEKRAEFDRATTEYNKKMENGDFEETDEESEYDE 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04134 153 MobiDBLite consensus disorder prediction 134 153 - -
Trre8g04134 153 MobiDBLite consensus disorder prediction 35 66 - -
Trre8g04134 153 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 65 134 IPR009071 -
Trre8g04134 153 CDD HMG-box_AtHMGB1-like 66 126 - -
Trre8g04134 153 Gene3D High mobility group box domain 59 149 IPR036910 -
Trre8g04134 153 SMART hmgende2 64 135 IPR009071 -
Trre8g04134 153 SUPERFAMILY HMG-box 57 139 IPR036910 -
Trre8g04134 153 MobiDBLite consensus disorder prediction 1 23 - -
Trre8g04134 153 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Trre8g04134 153 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 38 150 IPR031061 -
Trre8g04134 153 Pfam HMG (high mobility group) box 65 134 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04134 Trre-Chr8 46088384 46092065 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trre8g04134 HMG_box 1.3e-17 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04134 - - mtr:25493401 201.445