Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04125 ATGTTATCTCTAAACCTTAAATTGACCATAGTCATACTCATTTCAATTCTATCCATTATTATTTCAAATGCTCAAACAACAACAAAAACAACATCAATTGAAGTTGAAATTGAAGCATTAAAACAATTCAAAAAATCCATAACAAATGATCCAAACAAAATCCTTGCAAATTGGATTGACACAAAACCTCATTGTAACTGGTCAGGAATTGAATGTAACAACCAAACATCAAAACATGTTATATCAATTTCACTTTTTGAACTTCAACTTGAAGGTGAAATTTCACCATTTATTGGTAACATTTCATCTCTTCAACTTCTTGATTTAACTTCAAATTCATTCACTGGTCAAATTCCACCACAAATTAGTCAATGCTCTCAACTCACAACACTTTATCTTACTGATAATTCTCTCTCAGGTTCAATTCCTCATGAATTAGGTAACCTAAAAAATTTGCAATTTTTGGATTTAGGTAGTAACCATTTCAATGGAACTTTACCTAATAGTATATTCAATGTTACTTCTTTGTTAGGTTTTGCTTTCAATTTCAATAATCTTAGTGGCACAATCCCTTCAAATGTAGGAAATTCAGTTAACATTATACAAATTGCAGGATTTGGGAATAGTTTTGTTGGGTCTATACCTGTTTCTATAGGTAAATTAGGGTTTATGAAATCGTTCGATTTTAGTCAAAATAAGTTATCTGGTGTGATTCCTAGAGAGATTGGAAATTTAACAAATTTACAAAATCTTCTCTTGTTTGATAATTCATTGAGTGGAAAAATTCCTTCTGAGATTGGTCATTGTAGAAATCTTGTTTTTCTTGAGTTATATGAGAATGATTTCATTGGAAATATTCCTCATGAGTTAGGGAATTTAGTTCAGTTACAAACATTGAGGTTATTTGATAATAAGTTGAATTCAACTATACCAGATTCTATATTTAAGTTGAAATCATTAACACATTTAGGATTATCAGAAAATAACTTAGAGGGAACAATTTCTTCTGAGATTGGATCTTTGAGTTCTTTAAAAGTGTTAACTTTGCATTTAAATAAGTTTACCGGGACGATTCCTTCATCGGTAACAAATTTGAGAAACTTGACATCTCTTTCCATGAGTCAGAATCTTCTTTCTGGTGAAATTCCTTCAAACTTAGGCGTGCTTCGTAATTTGAAGTTTCTTGTCTTGAACAACAATTTTTTACATGGTCCTGTTCCTCCTAGCATTATCAATTGTACTAGTTTGTTAAATGTGAGTTTGTCTTTCAATGCTTTATCTGGGAAAATTCCTGAGGGTTTTTCAAAGCTACCTAATTTGACTTTTTTGTCTCTTGCATCCAACAAAATGAGTGGTGAAATTCCAAATGATCTTTTCAATTGTTCAAACCTTAGTACTCTAAGTTTGGCTGAAAACAACTTCAGTGGATCGATAAAATCTGGTATCAAGAATCTGTTTAATCTCATGCGTTTGCAGTTGAACGTAAATGCTTTCGTAGGACCGATTCCACCAGATATTGGAAACTTGAATAAACTCATCTCTTTGTCTCTTTCTGAAAATAGATTTTCAGGTCATATTCCTATAGAGTTGTCAAAACTTTCTCTCCTCCAGGGACTTGCTCTTCATGACAATGTATTAGAAGGTACAATACCTGATAAACTTTCGGAACTAAAACAATTGACTCAACTTTTGCTCCATGAAAACAAGTTGGTTGGTCAAATACCGGATTCTATCTCAACTCTTGAGATGCTTTCACACTTGGATCTTCATGGAAACAAACTTAACGGTTCCATTCCGAAAAGCATGGGGAAGCTTGATCATCTTTTAATGTTGGATCTCTCTCACAACCAACTCACAGGATCGATTCCCGGAGATGTCATTGCACACTTCAAAGACATGCAGATGTATCTTAACCTTTCTTACAATCACTTTGTTGGAAATGTTCCTTCTGAGTTGGGGATGTTGGAAATGGCACAAGCGATTGATGTTTCAAACAATAATCTTTCAGGTGTCCTTCCAAAGACACTTGTGGGGTGCAGAAATATGTTTAGCCTTGATTTCTCAGGAAACAATATTTCAGGTCCTATTCCTGCTGAAATTTTTAGTGGTATGGACTTGCTTCAAAGTTTAAATCTTTCAAGAAATCATTTAGATGGTGAAATCCCTAAAAGCTTGTCACAGCTTAAGAATCTTAGTTCCTTAGATCTTTCTCAGAATAACTTGAAGGGAAGTATTCCTGAGGGATTTGCCAATCTTTCCAACTTGATGCAGGTCAACTTTTCTTTCAATCAACTTGAAGGTCCTGTACCTTTGACCGGAATCTTTGCGCATATGAATGCATCTAGTATGATGGGAAACCAGGCTCTTTGTGGAGCAAAATTCCTAAGGCCATGCAGAAAGAATGATCATTCTGTATCCAAGAAGGCCGTAGCTATCATTGCTGCCCTTGGATCTCTTGCTGTACTTCTACTTGTAGTGCTTCTGATTTTATATCTCAACCGAGGCACCATATTTGGTAATTCTGCAAAGACTAGCAATACTGAGAATCATGAATCAGTGCATGGTTCATCAGTGGGTCTTAAAAGATTCAGTCCAAAGGAATTAGAATATGCCACTGGTTGTTTCAGCTCAGACCACATCATCGGTGCTACCAGTTTGAGCACTGTTTACAAGGGTCAATTTGAAGATGGTCAGGTTGTAGCCGTAAAAAGCTTGAATTTGCACCAATTTTCTGCAAATACCGACAAGATCTTCAAGAGAGAAGCCAGTACTTTGTGCCAGCTGAGACATAGGAATTTGGTTAAGATCCTTGGATATGCTTGGGAAAGTCAGAAAATAAAGGCTTTAGTCTTAGAGTACATGGAGAATGGGAATCTGGATAGCATCATACATGATAAAGAGATAGATCAGTCAAGGTGGACGTTATCTGAAAGAGTCCGCGTTTTCATTTCTATTGCGAGTGGATTGGATTACTTGCACTCTGGCTATGGTTCTCCCATTGTCCACTGTGATCTAAAGCCTTCTAACATCCTTTTAGATAGAGATTTTGAAGCTCATGTCAGTGATTTTGGAACAGCTCGAATACTTGGTCTTCATCTGCAGGATGGTAGTGCCCTTTCCTCAACGGCAGCTTTGCAAGGCACAGTTGGTTATTTGGCACCAGAATTTGCCTACATGAAGAAAGTAACAACTAAAGTGGATGTGTTCAGCTTTGGTATCATAGTAATGGAATTTCTAACAAGAAAAAGGCCAACAGGGCTCTCAGAAGAGGATAGCTCGCTAATCAGTTTGCGTGATGTAGTGGCAAAAGCCGTTGCAAATGGAACGGAGCAGATTATCAACATTGTGGACCCTGAATTGATCACAAAAGACAATGGAGAAGTGTTGGAAGAGCTCTTTAAGCTATCATTGTGCTGCACCTTCTCTGATCCTGAACATCGACCCAATATGAATGAAGTTTTATCCGCACTTGTAAAGCTTAAGACAGCAAGATAG 3495 0.3631 MLSLNLKLTIVILISILSIIISNAQTTTKTTSIEVEIEALKQFKKSITNDPNKILANWIDTKPHCNWSGIECNNQTSKHVISISLFELQLEGEISPFIGNISSLQLLDLTSNSFTGQIPPQISQCSQLTTLYLTDNSLSGSIPHELGNLKNLQFLDLGSNHFNGTLPNSIFNVTSLLGFAFNFNNLSGTIPSNVGNSVNIIQIAGFGNSFVGSIPVSIGKLGFMKSFDFSQNKLSGVIPREIGNLTNLQNLLLFDNSLSGKIPSEIGHCRNLVFLELYENDFIGNIPHELGNLVQLQTLRLFDNKLNSTIPDSIFKLKSLTHLGLSENNLEGTISSEIGSLSSLKVLTLHLNKFTGTIPSSVTNLRNLTSLSMSQNLLSGEIPSNLGVLRNLKFLVLNNNFLHGPVPPSIINCTSLLNVSLSFNALSGKIPEGFSKLPNLTFLSLASNKMSGEIPNDLFNCSNLSTLSLAENNFSGSIKSGIKNLFNLMRLQLNVNAFVGPIPPDIGNLNKLISLSLSENRFSGHIPIELSKLSLLQGLALHDNVLEGTIPDKLSELKQLTQLLLHENKLVGQIPDSISTLEMLSHLDLHGNKLNGSIPKSMGKLDHLLMLDLSHNQLTGSIPGDVIAHFKDMQMYLNLSYNHFVGNVPSELGMLEMAQAIDVSNNNLSGVLPKTLVGCRNMFSLDFSGNNISGPIPAEIFSGMDLLQSLNLSRNHLDGEIPKSLSQLKNLSSLDLSQNNLKGSIPEGFANLSNLMQVNFSFNQLEGPVPLTGIFAHMNASSMMGNQALCGAKFLRPCRKNDHSVSKKAVAIIAALGSLAVLLLVVLLILYLNRGTIFGNSAKTSNTENHESVHGSSVGLKRFSPKELEYATGCFSSDHIIGATSLSTVYKGQFEDGQVVAVKSLNLHQFSANTDKIFKREASTLCQLRHRNLVKILGYAWESQKIKALVLEYMENGNLDSIIHDKEIDQSRWTLSERVRVFISIASGLDYLHSGYGSPIVHCDLKPSNILLDRDFEAHVSDFGTARILGLHLQDGSALSSTAALQGTVGYLAPEFAYMKKVTTKVDVFSFGIIVMEFLTRKRPTGLSEEDSSLISLRDVVAKAVANGTEQIINIVDPELITKDNGEVLEELFKLSLCCTFSDPEHRPNMNEVLSALVKLKTAR 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04125 1164 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Trre8g04125 1164 SUPERFAMILY RNI-like 322 765 - -
Trre8g04125 1164 SUPERFAMILY Protein kinase-like (PK-like) 850 1159 IPR011009 -
Trre8g04125 1164 ProSiteProfiles Protein kinase domain profile. 875 1160 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04125 1164 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 402 1155 - -
Trre8g04125 1164 FunFam Leucine-rich repeat receptor protein kinase EMS1 408 493 - -
Trre8g04125 1164 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 954 1164 - -
Trre8g04125 1164 Pfam Protein kinase domain 877 1155 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04125 1164 Gene3D Transferase(Phosphotransferase) domain 1 954 1164 - -
Trre8g04125 1164 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1000 1012 IPR008271 GO:0004672|GO:0006468
Trre8g04125 1164 Pfam Leucine rich repeat 103 162 IPR001611 GO:0005515
Trre8g04125 1164 Pfam Leucine rich repeat 660 717 IPR001611 GO:0005515
Trre8g04125 1164 SUPERFAMILY RNI-like 82 403 - -
Trre8g04125 1164 SMART serkin_6 875 1158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04125 1164 CDD STKc_IRAK 881 1160 - -
Trre8g04125 1164 Gene3D Ribonuclease Inhibitor 206 362 IPR032675 -
Trre8g04125 1164 Gene3D Ribonuclease Inhibitor 483 802 IPR032675 -
Trre8g04125 1164 Gene3D Ribonuclease Inhibitor 33 205 IPR032675 -
Trre8g04125 1164 Gene3D Ribonuclease Inhibitor 364 481 IPR032675 -
Trre8g04125 1164 SMART LRR_typ_2 728 751 IPR003591 -
Trre8g04125 1164 SMART LRR_typ_2 365 389 IPR003591 -
Trre8g04125 1164 SMART LRR_typ_2 704 727 IPR003591 -
Trre8g04125 1164 SMART LRR_typ_2 149 173 IPR003591 -
Trre8g04125 1164 SMART LRR_typ_2 557 581 IPR003591 -
Trre8g04125 1164 SMART LRR_typ_2 245 269 IPR003591 -
Trre8g04125 1164 SMART LRR_typ_2 437 461 IPR003591 -
Trre8g04125 1164 SMART LRR_typ_2 605 629 IPR003591 -
Trre8g04125 1164 SMART LRR_typ_2 341 364 IPR003591 -
Trre8g04125 1164 SMART LRR_typ_2 293 317 IPR003591 -
Trre8g04125 1164 SMART LRR_typ_2 101 125 IPR003591 -
Trre8g04125 1164 SMART LRR_typ_2 509 533 IPR003591 -
Trre8g04125 1164 Gene3D Phosphorylase Kinase; domain 1 836 953 - -
Trre8g04125 1164 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 33 191 - -
Trre8g04125 1164 FunFam Leucine-rich repeat receptor protein kinase EMS1 215 311 - -
Trre8g04125 1164 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 837 953 - -
Trre8g04125 1164 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 626 802 - -
Trre8g04125 1164 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 527 625 - -
Trre8g04125 1164 PRINTS Leucine-rich repeat signature 608 621 - -
Trre8g04125 1164 PRINTS Leucine-rich repeat signature 728 741 - -
Trre8g04125 1164 FunFam Leucine-rich repeat receptor protein kinase EMS1 312 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04125 Trre-Chr8 46013812 46017430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04125 32 1161 Receptor kinase-like Gene Family AT5G46330 53.772 0.0 1138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre8g04125 Pkinase 4.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04125 K13420 - gmx:100788119 1645.17