Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04123 ATGGCCGCATCATCCATGGCTCTCACTTCACCTGCCTTGGCTGGCAAGCCAGTCAAGTTGACACCATCAAGTCAAGAATTGGGAGCTGCAAGGTTCACCATGAGGAAAGGTGCTGCCACCAAGAAAGTAGCCTCCTCTGGAAGCCCATGGTACGGCCCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGCCCCCGTCTTACTTGACTGGAGAGTTCCCAGGTGACTATGGTTGGGACACTGCTGGACTTTCTGCTGACCCAGAGACATTCGCCAAGAACCGTGAACTTGAAGTCATCCACTCTAGATGGGCTATGTTGGGAGCATTGGGATGTGTTTTCCCAGAGCTTTTGTCTCGCAACGGTGTTAAATTCGGTGAAGCTGTTTGGTTCAAGGCCGGATCTCAAATCTTTAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGTTTGGTCCATGCTCAAAGTATCCTTGCCATCTGGGCCACTCAAGTTATCTTGATGGGCGCAGTTGAAGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAAGTAGTTGACCCACTTTACCCAGGTGGCAGCTTCGACCCATTGGGCCTAGCCGACGACCCAGAAGCTTTCGCAGAATTAAAGGTTAAGGAACTCAAAAACGGTAGGTTAGCTATGTTCTCTATGTTTGGATTCTTTGTCCAGGCTATTGTGACTGGAAAGGGTCCTTTGGAGAACCTTGCTGACCATCTTTCCGACCCAGTTAACAACAACGCTTGGGCCTACGCCACCAACTTTGTTCCCGGAAAGTGA 801 0.5081 MAASSMALTSPALAGKPVKLTPSSQELGAARFTMRKGAATKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWAYATNFVPGK 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04123 266 SUPERFAMILY Chlorophyll a-b binding protein 49 263 - -
Trre8g04123 266 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 266 IPR001344 GO:0009765|GO:0016020
Trre8g04123 266 FunFam Chlorophyll a-b binding protein, chloroplastic 57 259 - -
Trre8g04123 266 Pfam Chlorophyll A-B binding protein 66 232 IPR022796 -
Trre8g04123 266 Gene3D Chlorophyll a/b binding protein domain 57 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04123 Trre-Chr8 46010907 46011707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04123 1 266 Chloroplast and Mitochondria Gene Families AT2G34430 88.060 2.12e-171 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04123 K08912 - jre:108990271 503.827