Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04113 ATGAGTTTCACAGAATGTTTACAAGGAGGAAACATGGATCATCACTACAATTCATCATCACTCGCGAATAATTCTCCTTTTGGAGTATTATCTCCTTCATCATCAGAAGTTTTTTCATCTGTTGATCAAGGAAATAATCAAAAACAAGAAGTAGTTGGTGGCGAAACCCTTCTTAACTCATCTATCTCTAATTCATCGTCTTCTGAAGCCGGAGGAGGAGGAGGAGCAGAAGAAGAAGATTCCGGCAAGAAAAAGAAAAATATTGGACAAGTTAAAGAAGAACCAGGACAAGAAGCCACTAAAAATGGGAACAACAAGGTGGAGAAGAAGAAAGGAGAGAAGAAACAAAAGGAACCAAGATTTGCTTTCATGACAAAGAGTGAAGTTGATCAACTTGAAGATGGATATAGATGGAGAAAATATGGACAAAAAGCTGTCAAAAATAGTCCATACCCTAGGAGCTATTACAGGTGTACAACACAGAAATGCACAGTGAAAAAACGCGTAGAAAGATCATATGAAGACCCAACAACTGTGATAACAACATATGAAGGTCAGCATAATCATCCTGTCCCCACTTCTCTTAGAGGCAATGCGGCTTCAATGTTCACACCTTCTCATTTGCTATCTACACCCACCCCTTTTACTTCATCCGGGTCAAACTATAATTTTCCTCAAGAACTGCTTCTCCATATGCACCACAACAACAATAATACCTTCAATAATCAATCAACAACATATGCTACTAGTAATGCTTCCATTTATTCATCATCACACAATAATATTAACAACTCTCTTCTTCAACAATATCAACATCAAGTACTTCCTAATCATGATCAATATGGACTCCTTCAAGATATTGTCCCTTCCATGTTCCTTAATAGGACCAACCATAACTAA 900 0.3744 MSFTECLQGGNMDHHYNSSSLANNSPFGVLSPSSSEVFSSVDQGNNQKQEVVGGETLLNSSISNSSSSEAGGGGGAEEEDSGKKKKNIGQVKEEPGQEATKNGNNKVEKKKGEKKQKEPRFAFMTKSEVDQLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSYEDPTTVITTYEGQHNHPVPTSLRGNAASMFTPSHLLSTPTPFTSSGSNYNFPQELLLHMHHNNNNTFNNQSTTYATSNASIYSSSHNNINNSLLQQYQHQVLPNHDQYGLLQDIVPSMFLNRTNHN 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04113 299 MobiDBLite consensus disorder prediction 103 119 - -
Trre8g04113 299 Gene3D WRKY domain 116 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre8g04113 299 ProSiteProfiles WRKY domain profile. 127 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g04113 299 Pfam WRKY DNA -binding domain 133 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g04113 299 MobiDBLite consensus disorder prediction 76 92 - -
Trre8g04113 299 MobiDBLite consensus disorder prediction 21 119 - -
Trre8g04113 299 MobiDBLite consensus disorder prediction 21 71 - -
Trre8g04113 299 SUPERFAMILY WRKY DNA-binding domain 124 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre8g04113 299 SMART WRKY_cls 132 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g04113 299 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 46 244 IPR044810 GO:0003700
Trre8g04113 299 FunFam WRKY transcription factor 57 118 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04113 Trre-Chr8 45947623 45949189 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04113 2 293 WRKY Transcription Factor Family AT4G18170 48.495 1.05e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre8g04113 WRKY 1.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04113 - - cam:101497541 304.293