LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre8g04111	ATGGAAAAGGAGCCACTGCTCCCATATTTCAGCCCAAGGAAGAAGCTTTCGCCATTGCCACATCAGCTTTTTCCTTTACCTGAAAATGATGAAATGGTTCTTCCTGTTACACCTTCTGAGTTCAAAGATCGTCTCATCTTTGGTCCTACACCAGTTGATCCTGATGCATTAACACTTTCACGTAATTCACCAAAATCTTCTTGTTCTTCTTCACAAGATTTTGTTGATTCTTCATCACAACAGCAATTACCTTCTTGGCTTATTGATCCTAATTATTCAAGGGGTAAAACAAATCTTCATCGTTCCAAAACTGCACCTGCTATGGCTGTTATTAGTGATTTCAATCATCGTGAATCTGTTAAAAGACCTCAATTTGGTAGCCAATCTATTGTTCATCAAGCTGTTATTCTTCTTGTTCTTTATTTGGCTTTAGGGGTTGTTATTTATTGGTTCAATCGTAATAATTTTACAGCAACAGAAACTCATGTTATAGTTGATGCATTGTATTTTTGTATAGTTACAATGTGCACAATAGGTTATGGTGATATTACACCTAATAGTACTGCAACCAAGATTTTCTCTATATTGTTTGTGTTGATTGGTTTTGGTTTTATTGATATATTGCTTAGTGGAATGGTTAGTTATGTTCTTGATTTGCAAGAAAATCATTTGTTGAGGGCGGTGAAGGGAAGGGGTGGGAAAGATGGTAGGTCATATTTAGTTGATGTCAAGAAAGGGAGGATGAGGATTAGGATGAAGGTGGCATTGGCACTTTTGGTTGTGGTACTTTGTATTGGACTTGGTGTTGGGGTTATGCATTTTGTTGAAAGGCTTGGATGGGTGGATTCTTTTTATCTTTCAGTTATGTCTGTTACAACGGTTGGATATGGTGATCATGCTTTTAAGACCATGCATGGTCGTATTTTTGCTGCAATTTGGTTGCTTGTGTCGACGCTTGCGGTGGCCCGAGCATTCCTTTATTTGGCTGAGGCGAGAGTGGATAAGCGGCATAGGAGGATGGCAAAGTGGATTCTTGGTCAGGATATGACTGTTGCTGAGTTTCTTGCTGCTGACATAGACAATAATGGATTTGTTAGTAAATCAGAATACGTTATATACAAGCTCAAGGAGATGGGAAAAGTGACAGAGAAGGACATCATGCAGTACTCCTTCGGTGTTCCTGAACCACCAATCAAGCTGCCTCCAATGATCAAGGTATTATCAATTAATTATAGTATTGTTAGGCTGATGAGATGGCTTGTGGTGGTAATGGAGAGGACAATTTTGGTTGGTTAA	1296	0.3889	MEKEPLLPYFSPRKKLSPLPHQLFPLPENDEMVLPVTPSEFKDRLIFGPTPVDPDALTLSRNSPKSSCSSSQDFVDSSSQQQLPSWLIDPNYSRGKTNLHRSKTAPAMAVISDFNHRESVKRPQFGSQSIVHQAVILLVLYLALGVVIYWFNRNNFTATETHVIVDALYFCIVTMCTIGYGDITPNSTATKIFSILFVLIGFGFIDILLSGMVSYVLDLQENHLLRAVKGRGGKDGRSYLVDVKKGRMRIRMKVALALLVVVLCIGLGVGVMHFVERLGWVDSFYLSVMSVTTVGYGDHAFKTMHGRIFAAIWLLVSTLAVARAFLYLAEARVDKRHRRMAKWILGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKVTEKDIMQYSFGVPEPPIKLPPMIKVLSINYSIVRLMRWLVVVMERTILVG	431

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre8g04111	431	Gene3D	-	113	230	-	-
	Trre8g04111	431	Gene3D	-	240	349	-	-
	Trre8g04111	431	FunFam	Two-pore potassium channel 5	119	229	-	-
	Trre8g04111	431	PANTHER	POTASSIUM CHANNEL, SUBFAMILY K	135	388	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Trre8g04111	431	PRINTS	Two pore domain K+ channel signature	173	201	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Trre8g04111	431	PRINTS	Two pore domain K+ channel signature	292	301	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Trre8g04111	431	FunFam	Two-pore potassium channel 3	237	351	-	-
	Trre8g04111	431	SUPERFAMILY	Voltage-gated potassium channels	128	216	-	-
	Trre8g04111	431	MobiDBLite	consensus disorder prediction	56	82	-	-
	Trre8g04111	431	Pfam	Ion channel	136	216	IPR013099	-
	Trre8g04111	431	Pfam	Ion channel	258	329	IPR013099	-
	Trre8g04111	431	SUPERFAMILY	Voltage-gated potassium channels	244	351	-	-
	Trre8g04111	431	ProSitePatterns	EF-hand calcium-binding domain.	358	370	IPR018247	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre8g04111	Trre-Chr8	45917399	45922466	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre8g04111	4	390	Ion Channels	AT4G18160	62.315	1.37e-167	476

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre8g04111	K05389		-	gmx:100804249	618.616