Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04084 ATGGTGACATTCTCGGTCGGTGGTTCCGACGACGGTGAAGGACCTAGCAACCCAAACCAGAAGCGCCGAAGGGTTCACGACGAAGAACAACCAGCATACAACACAGAAGACGAAGAAAACCAACTATCATATGAATCCCAAGAAGGATTCGAAATGGAAAATTCCCCATTTGGAACCCTAGAAAATGACGCAATTGAAGGAACCTCCTCTGGATCCAACTCAAGACAAGCTAATGACATGTGTAAGACCGTTTCTGCAGTCATTTCCGACCCTGATGTTCTTGATTGTTTCATTTGTTCTGAACCATTGTCAATTCCTATATTTCAGTGTGAGAATGGCCATATTGCTTGCTCTAAGTGCTGTGGTGAACTTAGGAACAAATGTCCCATGTGTTTAATGCCCATTGGGTACAATCGTTGCCGGACTGTGGAGAAGTTGCTTGAATCTATTAAAATATCATGCCCAAATGCAAACTATGGCTGTAAAAAGATGTTTAGTTGCAATATGAAAAGTAGCCACGAGAAGGAATGCCTATATACACCATTTAAATGCCCACATGCAGGTTGCGGCTTTCTTGCCTCATCCAAGGAGTTAGCGCTCCACTTCAGCCATAGGCATGCCGGCTCTGGAATACAGTTTAGGTATGGCAAATACATATCTGTCTCCATGAATACTCGTCAAAAAGAAATTGTTCTTATAGATCAAAATGATGCAACACTATTTATTGTTCACAATAACCTTAAGGAATTGGGAAATGTGGTCTATATTAGTTGTCTTTGTCCCAAAGCGATGGCGAGTTTTGATTATGTTGTCAAGGCCAGGTCTCATGCAACCAAATTGAAACTGCAAACTACTGTGAATACCATTCAAGACAATAATGGCGGTGCTCCTACAACTGGTTTTCTTTTGATTCCTTCAGGTTATTTTGGATTTGGACAACTCAAATTAGATATTCGTATAAAGTCTCACTAA 972 0.4105 MVTFSVGGSDDGEGPSNPNQKRRRVHDEEQPAYNTEDEENQLSYESQEGFEMENSPFGTLENDAIEGTSSGSNSRQANDMCKTVSAVISDPDVLDCFICSEPLSIPIFQCENGHIACSKCCGELRNKCPMCLMPIGYNRCRTVEKLLESIKISCPNANYGCKKMFSCNMKSSHEKECLYTPFKCPHAGCGFLASSKELALHFSHRHAGSGIQFRYGKYISVSMNTRQKEIVLIDQNDATLFIVHNNLKELGNVVYISCLCPKAMASFDYVVKARSHATKLKLQTTVNTIQDNNGGAPTTGFLLIPSGYFGFGQLKLDIRIKSH 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04084 323 SUPERFAMILY TRAF domain-like 149 320 - -
Trre8g04084 323 MobiDBLite consensus disorder prediction 1 15 - -
Trre8g04084 323 MobiDBLite consensus disorder prediction 61 75 - -
Trre8g04084 323 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 55 322 IPR044286 -
Trre8g04084 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 202 IPR013083 -
Trre8g04084 323 MobiDBLite consensus disorder prediction 1 75 - -
Trre8g04084 323 MobiDBLite consensus disorder prediction 36 53 - -
Trre8g04084 323 CDD RING-HC_SIAHs 94 131 - -
Trre8g04084 323 Pfam Seven in absentia protein family 139 293 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre8g04084 323 ProSiteProfiles Zinc finger SIAH-type profile. 149 207 IPR013010 GO:0008270
Trre8g04084 323 MobiDBLite consensus disorder prediction 16 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04084 Trre-Chr8 45619991 45623067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04084 55 320 C3H Transcription Factor Family AT2G41980 25.926 3.63e-21 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04084 K04506 - gmx:100778869 363.229