Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04082 ATGGCTACCACAATTTCACCAACTTGGTTCATCTTTGTTCCTATGATCATTATTTTATCATCATTATGTCCCATAAAAACATTATGTGCAACAGTCCTAGAAGACCTTAAAAACTTACACAAACCATCAGATTTCAACACTACAATTTTCAACAACTGTCTCAAAAACCCATCTCTAAGATACTGCAATTCATCTCCTATGATAGACCTTGATGAAATATTCAAACACACAATTGTTGCTAGCCATCTTTGCAATGAATCTAACAACCCCAATTGTGTTGAATCGTTCCCGAAAATCGATCTTCGAAACCGACCAAACATTGCTTCTCTTTACTTGTCTTTCACTTTCTTTTGGAAATATTGTCCATTGAGTATTTTATCTATTGATTTCTCTAACAATTCTGTGAAGGGTAGTTTTCCAAATGATGTTCTTTATTGTACACAAATTCAGTCTCTTGATTTAAGTCTCAATGAATTTTCTGGTGAAATTCCTATTGAAAGTTTCTCTTCATTAACTAACCTCACTTTTCTTAACCTCTCTTATAACTGTTTTTCTGAGAGTAAAGTTTCTGATTCACAATTTTTCAAAAGGTTTAACTCTTCTAGTTTTCTTCATTCTGGTGCTCTCATTGATCATAAAAAGTTTACTATAAAAGCTATCATTTTATTGGTTGGTTTTCCTATTCTTGTTATTTTGATGGTAATTTTCTTGGCATGGCTTTGTTTTCAAAGACCTGATTTTCTTCCAAGAATATTTCAAAGTAGTAGAAAGTTTACATTTACGCCGGCAATTCTAAAGGCGGCAACTTACGGTTTTTCGAAGGAAAATTTGGTTGGTAAGAGTGATATTGTTCATATCTATAAAGGGATGTTAAGAGATGGAACTAAAGTGAAAATTGAGATGTATTGGGATGATATATCAAGGGATAGTTATCATCAATTTGTTGAGGAATGTAAGGTATTGTCTGAGTTAAACCATAAGAATCTTGTTAAGGTTTTAGGGTGGTGTAAAGGTAGAAAATTCAGGGCTATTATAACAGAATGGACAAAAGATGAAAATGTTGAAATGTGGTTATCAAGGGAAGCAGCATCATGGAATCATAGAGTGAAAGTTTTGATGGAAGTTGTTGAATGTATGGTATACTTGCATGAGGAATGGCCTGAAGTTGATTATGATCTCAAGACAAGTAGTGTTTTGTTATCTGATAATCTTGAACCATTGATTTCAAGGTTTCAAGTTGGAGACAGAAACAACAGTAGAAAAAAGATATGCAAGTTTGGAGTATTTTTGCTAGAGATGATACTAAACAAGAGTATTCAAGAGGAGTTTGATGGAAATGATGATGGATTTATTACCTACATGAGAACCCTTCATCATCATGCAGAATTACAACAGATGATTGATGAGAGAATGGATTTAAATGAAACAACTTTGCATCAAGTTAAACAAGCTTTATCACTTGGATTAATGTGCATAGACCAATCAAACAGTGACCATCCAAGCTTGGCACAAATATTCAATGTTGTATCAAAGGCATACAAGGCTAATCTTGTTTTGACATCTTCGAATCATAAAACATTTCACGGAGATAAAGTTAAGGGACATAAGCGAGTTCAATTCAAATAA 1626 0.3315 MATTISPTWFIFVPMIIILSSLCPIKTLCATVLEDLKNLHKPSDFNTTIFNNCLKNPSLRYCNSSPMIDLDEIFKHTIVASHLCNESNNPNCVESFPKIDLRNRPNIASLYLSFTFFWKYCPLSILSIDFSNNSVKGSFPNDVLYCTQIQSLDLSLNEFSGEIPIESFSSLTNLTFLNLSYNCFSESKVSDSQFFKRFNSSSFLHSGALIDHKKFTIKAIILLVGFPILVILMVIFLAWLCFQRPDFLPRIFQSSRKFTFTPAILKAATYGFSKENLVGKSDIVHIYKGMLRDGTKVKIEMYWDDISRDSYHQFVEECKVLSELNHKNLVKVLGWCKGRKFRAIITEWTKDENVEMWLSREAASWNHRVKVLMEVVECMVYLHEEWPEVDYDLKTSSVLLSDNLEPLISRFQVGDRNNSRKKICKFGVFLLEMILNKSIQEEFDGNDDGFITYMRTLHHHAELQQMIDERMDLNETTLHQVKQALSLGLMCIDQSNSDHPSLAQIFNVVSKAYKANLVLTSSNHKTFHGDKVKGHKRVQFK 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04082 541 Gene3D Transferase(Phosphotransferase) domain 1 351 424 - -
Trre8g04082 541 Pfam Protein tyrosine and serine/threonine kinase 276 428 IPR001245 GO:0004672|GO:0006468
Trre8g04082 541 Gene3D Transferase(Phosphotransferase) domain 1 425 531 - -
Trre8g04082 541 SUPERFAMILY Protein kinase-like (PK-like) 254 509 IPR011009 -
Trre8g04082 541 SUPERFAMILY L domain-like 74 190 - -
Trre8g04082 541 Gene3D Phosphorylase Kinase; domain 1 252 348 - -
Trre8g04082 541 ProSiteProfiles Protein kinase domain profile. 272 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04082 541 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 102 196 - -
Trre8g04082 541 Gene3D Ribonuclease Inhibitor 44 214 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04082 Trre-Chr8 45612401 45614410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04082 117 505 Receptor kinase-like Gene Family AT1G51890 24.276 9.53e-28 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre8g04082 PK_Tyr_Ser-Thr 3.7e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04082 - - gmx:100779045 822.387