Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04079 ATGTCAAGAGAATTTGATTTCATTAAGGATCTAACCAAGGACAGAGAGATTTGGAAAATAGCTGTAAGAGTGGTTGATTCATGGACTGTTATAGGCACCAATGGTAATCCACACCTCGAAATGGTTATTGTTGATGCAAAGGGTGATCGTGTTCAAGCTGTTACTCGCTATAAGGAGTTTGAACATTGGAAGTCATTTATTGTGGACCATAAGGTCTATGTTCTTCATAACTGTCATGTTTATCCTAATGATACAGGATTCAAAATTTGTGAGGGTCCTTTCAAAGTTGTGTTTGGTTCGGGTACTAAGCTAACTACTGGTGATGATATCACAAACCTTCCTCCTCATGAATATCGCTTTAAAAGTTTCAAGGAAACTCAGGATGGGAAGTTTAAAATAAATGTTTTGTATGAGATTATTGGAGTTCTTCATGAAGTTGTCAAGACCCAACCACTTGCTGCCGGTAAAAAACCATGTACCAATTTAGTCCTAGCTAATGAAAGTGGTGATTTGGTTGATGTTACTCTGTGGGAAAGTTTTTCACTTCAGTTAATGAAATTCATTGCTGATCGCAAAGAGAAAGGCCCAATCATTTTAATTCTAACCCATGCACAGTGCAAACTAGGAGATAATGGAAAGCCAAACTTTTGTAACAATTGGTCGGGTTCCAAGCTTTTGATCAATCTCGAACACCCAGCTGTTGCAAAGTTTAAGTCTTCATGTAAAGACATTGAAACTTCACAAGCTGCTACTCAAGACTTCACTCAAGCTTCCTCTTCTTCTCAACACACAAGCAAAGAGGACTTCTCAAATATGAGTCAAGTCAAAACTATTGCACAAATGAAACTTTTTCAAAAGGACTCACACTGCATTACTATTGGAACTACCAAAAAATTCAATCCTAATCAATTTGGTTGGTACTATGAAAGTTGCACCAAGTGCACAAAATCTTCAAGGTCTATGGGTGCTGAATATACATGTTCATGTGGTGAAGAAGTCAAAGCACCAATTGCTAGGTTCAAAGTTGTCGTTCAAGTCGAATTCGAAGGACATAAGGCTGATTTTGTTTTCTGGGACAATGAATGTCAAGCTATTATTGGGAAAACTGCCGAAGACTTGAGGGAGACAATGAAGAAGGTTGGAGAAGACGATCCTAAAATATATCCCGTTCACCTTGACAAGCTTTTGGGCTTAGAGTTTGTATTTAAAGTTAAATATCAGTCTTACTATCGTCAAGCTTCCATTAATAAGATGTCTGGTGATCTAGCACTTATCGCCAACATTAAGCTTCACATGAATGGTAAACAGCCTTCTCCAATCCCTACACAATTTGTCGATGAAGTCTCCAAACAGTCGTCCATTTTTGAAAAGGAGAAGACTGATTGCTCTGATTCTCTCCTTTTTGCTTCGCAATCACTCTCTGCTACTGGTGATAATGAATTTGAGCATACCTCTAACATTACACCAGCTAAGCGTCTTTCTGCTGATACTGAAGTTGACGATATTGCATCTCCTTCCTTTGGAACAACACAACTCTCATCCACAAAGACTGGAAAGCATATCAAAATTGAATGA 1575 0.3822 MSREFDFIKDLTKDREIWKIAVRVVDSWTVIGTNGNPHLEMVIVDAKGDRVQAVTRYKEFEHWKSFIVDHKVYVLHNCHVYPNDTGFKICEGPFKVVFGSGTKLTTGDDITNLPPHEYRFKSFKETQDGKFKINVLYEIIGVLHEVVKTQPLAAGKKPCTNLVLANESGDLVDVTLWESFSLQLMKFIADRKEKGPIILILTHAQCKLGDNGKPNFCNNWSGSKLLINLEHPAVAKFKSSCKDIETSQAATQDFTQASSSSQHTSKEDFSNMSQVKTIAQMKLFQKDSHCITIGTTKKFNPNQFGWYYESCTKCTKSSRSMGAEYTCSCGEEVKAPIARFKVVVQVEFEGHKADFVFWDNECQAIIGKTAEDLRETMKKVGEDDPKIYPVHLDKLLGLEFVFKVKYQSYYRQASINKMSGDLALIANIKLHMNGKQPSPIPTQFVDEVSKQSSIFEKEKTDCSDSLLFASQSLSATGDNEFEHTSNITPAKRLSADTEVDDIASPSFGTTQLSSTKTGKHIKIE 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04079 524 MobiDBLite consensus disorder prediction 504 518 - -
Trre8g04079 524 Gene3D - 3 106 IPR012340 -
Trre8g04079 524 MobiDBLite consensus disorder prediction 504 524 - -
Trre8g04079 524 Gene3D - 111 253 IPR012340 -
Trre8g04079 524 PANTHER OS03G0429900 PROTEIN 7 488 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre8g04079 524 Gene3D - 254 429 IPR012340 -
Trre8g04079 524 SUPERFAMILY Nucleic acid-binding proteins 276 407 IPR012340 -
Trre8g04079 524 CDD RPA1_DBD_A_like 19 103 - -
Trre8g04079 524 SUPERFAMILY Nucleic acid-binding proteins 118 241 IPR012340 -
Trre8g04079 524 SUPERFAMILY Nucleic acid-binding proteins 4 113 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04079 Trre-Chr8 45568115 45570705 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04079 136 432 Core DNA Replication Machinery Family AT5G61000 22.581 2.44e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04079 - - tpra:123885385 826.239