Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04071 ATGGAGTGGATGCGAAAGACCAAGACCAAAAAACCGCCACGATTGGAACGAATGAACGCCAAAAAGAACATCAATTACCAACTTCCCACCACCACCACCGTCGCCGCCGTCACTTCTCCATCTCCAATTCAATCTTCTTCCGACGAAGAAACCAGTCTTCGTGTATTAGGCATCGACGGCGAATTCGATCGAATTTTTCAAAGTTTAGGTCTATCTGGACCTGAAGATTTCGCTATCCCAACTCAAGATTGGGAAGCTAGAAAGGTTCGCTCTGTTTCTGCAATTTCGGTTGCTGATGATGTTGCTGTTTCTGTTGCTGTTAGGGATTCTCCTTCTTCTTCGGGTGAACATGGTGTTAGGGTTGTTGTTGATCCACTCATAAATGGTGAAAGGAGTGTGCTTTTTACTGATTCTGGTTCTTTTACTACTTCTCATGATTATGATAGTGATGGTGTTGGTGAGAGGAATTTGTTTCCTCCTTCTGGATGGATTAAACCTACTTTTTCTTCTTGGCAAAAAGGTGGCATTTTGGGAAAGGGTTCTTTTGGAACTGTTTATGAATGCTTCACTGACGATGGATTCTTTTTTGCGGTCAAGGAGGTGTCTTTGCTGGATGATGGTAGCCAAGGAAAACAGAGTATTTTCCAACTTCAGCAGGAAATATCTCTTTTGAGTCGGTTTCAACATGATAACATAGTTCGATATTATGGCTCAGACAAGACTGAAAGCACACTGTATATATTCCTCGAGCTTGTGTCAAAAGGGTCATTGGCCAGTCTTTATCAAAGCTATCACCTAAATGATTCTCAAGTTTCTGCATACACAAGACAGATTTTAAATGGCTTGAAGTATCTTCATGAACAGGATGTGGTCCATAGGGATATCAAGTGTGCCAATATACTGGTTGATGTAAATGGGTCGGTCAAGCTTGCAGATTTTGGATTGGCAAAGGCAACAAAATTGAATGATGTTAAATCAAGCAAAGGCTCCCCATACTGGATGGCCCCTGAGGTTGTTAACTTAAGGAACCAAGGTTACGGGCTAGCAGCTGATATATGGAGCTTAGGTTGTACTGTTTTAGAGATGCTGACAAGGAAGCCTCCTTACTTTGATTTGGAAGGAATGCAAGCAATATTTCGGATTGGCAGGGGTGAACCCCCACCCATTCCTGAATCTCTATCTAAAGATGCCCGAGATTTCATTCTTAAATGCTTACAAGTTAACCCAAGTAAACGCCCAACTGCAGTTCAGCTATCGGATCATCCATTTCTAAGGAGACGACCAAGTTCATCTTCTCCACGTTTTAATAGTATCATTCGGCCTTAA 1326 0.4216 MEWMRKTKTKKPPRLERMNAKKNINYQLPTTTTVAAVTSPSPIQSSSDEETSLRVLGIDGEFDRIFQSLGLSGPEDFAIPTQDWEARKVRSVSAISVADDVAVSVAVRDSPSSSGEHGVRVVVDPLINGERSVLFTDSGSFTTSHDYDSDGVGERNLFPPSGWIKPTFSSWQKGGILGKGSFGTVYECFTDDGFFFAVKEVSLLDDGSQGKQSIFQLQQEISLLSRFQHDNIVRYYGSDKTESTLYIFLELVSKGSLASLYQSYHLNDSQVSAYTRQILNGLKYLHEQDVVHRDIKCANILVDVNGSVKLADFGLAKATKLNDVKSSKGSPYWMAPEVVNLRNQGYGLAADIWSLGCTVLEMLTRKPPYFDLEGMQAIFRIGRGEPPPIPESLSKDARDFILKCLQVNPSKRPTAVQLSDHPFLRRRPSSSSPRFNSIIRP 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04071 441 FunFam Mitogen-activated protein kinase 1, putative, expressed 169 436 - -
Trre8g04071 441 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 109 433 - -
Trre8g04071 441 SUPERFAMILY Protein kinase-like (PK-like) 158 431 IPR011009 -
Trre8g04071 441 MobiDBLite consensus disorder prediction 424 441 - -
Trre8g04071 441 Pfam Protein kinase domain 172 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04071 441 PRINTS Tyrosine kinase catalytic domain signature 284 302 IPR001245 GO:0004672|GO:0006468
Trre8g04071 441 PRINTS Tyrosine kinase catalytic domain signature 350 372 IPR001245 GO:0004672|GO:0006468
Trre8g04071 441 PRINTS Tyrosine kinase catalytic domain signature 249 262 IPR001245 GO:0004672|GO:0006468
Trre8g04071 441 PRINTS Tyrosine kinase catalytic domain signature 393 415 IPR001245 GO:0004672|GO:0006468
Trre8g04071 441 Gene3D Transferase(Phosphotransferase) domain 1 169 437 - -
Trre8g04071 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 290 302 IPR008271 GO:0004672|GO:0006468
Trre8g04071 441 ProSitePatterns Protein kinases ATP-binding region signature. 177 199 IPR017441 GO:0005524
Trre8g04071 441 MobiDBLite consensus disorder prediction 420 441 - -
Trre8g04071 441 SMART serkin_6 171 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04071 441 ProSiteProfiles Protein kinase domain profile. 171 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04071 Trre-Chr8 45480810 45485001 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04071 14 95 MAP Kinase Kinase Kinase AT4G08500 43.182 1.97e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre8g04071 Pkinase 8.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04071 - K13414 gmx:100820552 573.548