Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04070 ATGGAGTGGATGCGAAAGACCAAGACCAAAAAACCGCCACGATTGGAACGAATGAACGCCAAAAAGAACATCAATTACCAACTTCCCACCACCACCACCGTCGCCGCCGTCACTTCTCCATCTCCAATTCAATCTTCTTCCGACGAAGAAACCAGTCTTCGTGTATTAGGCATCGACGGCGAATTCGATCGAATTTTTCAAAGTTTAGGTCTATCTGGACCTGAAGATTTCGCTATCCCAACTCAAGATTGGGAAGCTAGAAAGGTTCGCTCTGTTTCTGCAATTTCGGTTGCTGATGATGTTGCTGTTTCTGTTGCTGTTAGGGATTCTCCTTCTTCTTCGGGTGAACATGGTGTTAGGGTTGTTGTTGATCCACTCATAAATGGTGAAAGGAGTGTGCTTTTTACTGATTCTGGTTCTTTTACTACTTCTCATGATTATGATAGTGATGGTGTTGGTGAGAGGAATTTGTTTCCTCCTTCTGGATGGATTAAACCTACTTTTTCTTCTTGGCAAAAAGGTGGCATTTTGGGAAAGGGTTCTTTTGGAACTGTTTATGAATGCTTCACTGACGATGGATTCTTTTTTGCGGTCAAGGAGGTGTCTTTGCTGGATGATGGTAGCCAAGGAAAACAGAGTATTTTCCAACTTCAGCAGGAAATATCTCTTTTGAGTCGGTTTCAACATGATAACATAGTTCGATATTATGGCTCAGACAAGAATCTTGGAAATTATGGTAGGCGTCAGATCACATTGTCTTTTGTTTACTGTGATGGGAAGACTGAAAGCACACTGTATATATTCCTCGAGCTTGTGTCAAAAGGGTCATTGGCCAGTCTTTATCAAAGCTATCACCTAAATGATTCTCAAGTTTCTGCATACACAAGACAGATTTTAAATGGCTTGAAGTATCTTCATGAACAGGATGTGGTCCATAGGGATATCAAGTGTGCCAATATACTGGTTGATGTAAATGGGTCGGTCAAGCTTGCAGATTTTGGATTGGCAAAGGCAACAAAATTGAATGATGTTAAATCAAGCAAAGGCTCCCCATACTGGATGGCCCCTGAGGTTGTTAACTTAAGGAACCAAGGTTACGGGCTAGCAGCTGATATATGGAGCTTAGGTTGTACTGTTTTAGAGATGCTGACAAGGAAGCCTCCTTACTTTGATTTGGAAGGAATGCAAGCAATATTTCGGATTGGCAGGGGTGAACCCCCACCCATTCCTGAATCTCTATCTAAAGATGCCCGAGATTTCATTCTTAAATGCTTACAAGTTAACCCAAGTAAACGCCCAACTGCAGTTCAGCTATCGGATCATCCATTTCTAAGGAGACGACCAAGTTCATCTTCTCCACGTTTTAATAGTATCATTCGGCCTTAA 1386 0.4199 MEWMRKTKTKKPPRLERMNAKKNINYQLPTTTTVAAVTSPSPIQSSSDEETSLRVLGIDGEFDRIFQSLGLSGPEDFAIPTQDWEARKVRSVSAISVADDVAVSVAVRDSPSSSGEHGVRVVVDPLINGERSVLFTDSGSFTTSHDYDSDGVGERNLFPPSGWIKPTFSSWQKGGILGKGSFGTVYECFTDDGFFFAVKEVSLLDDGSQGKQSIFQLQQEISLLSRFQHDNIVRYYGSDKNLGNYGRRQITLSFVYCDGKTESTLYIFLELVSKGSLASLYQSYHLNDSQVSAYTRQILNGLKYLHEQDVVHRDIKCANILVDVNGSVKLADFGLAKATKLNDVKSSKGSPYWMAPEVVNLRNQGYGLAADIWSLGCTVLEMLTRKPPYFDLEGMQAIFRIGRGEPPPIPESLSKDARDFILKCLQVNPSKRPTAVQLSDHPFLRRRPSSSSPRFNSIIRP 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04070 461 FunFam Protein kinase byr2-like 277 452 - -
Trre8g04070 461 SUPERFAMILY Protein kinase-like (PK-like) 169 449 IPR011009 -
Trre8g04070 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Trre8g04070 461 MobiDBLite consensus disorder prediction 444 461 - -
Trre8g04070 461 ProSitePatterns Protein kinases ATP-binding region signature. 177 199 IPR017441 GO:0005524
Trre8g04070 461 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 111 453 - -
Trre8g04070 461 SMART serkin_6 171 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04070 461 PRINTS Tyrosine kinase catalytic domain signature 304 322 IPR001245 GO:0004672|GO:0006468
Trre8g04070 461 PRINTS Tyrosine kinase catalytic domain signature 269 282 IPR001245 GO:0004672|GO:0006468
Trre8g04070 461 PRINTS Tyrosine kinase catalytic domain signature 370 392 IPR001245 GO:0004672|GO:0006468
Trre8g04070 461 PRINTS Tyrosine kinase catalytic domain signature 413 435 IPR001245 GO:0004672|GO:0006468
Trre8g04070 461 Pfam Protein kinase domain 172 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04070 461 MobiDBLite consensus disorder prediction 440 461 - -
Trre8g04070 461 Gene3D Transferase(Phosphotransferase) domain 1 169 457 - -
Trre8g04070 461 ProSiteProfiles Protein kinase domain profile. 171 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04070 Trre-Chr8 45480810 45485001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04070 14 95 MAP Kinase Kinase Kinase AT4G08500 43.182 2.30e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre8g04070 Pkinase 8.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04070 - K13414 gmx:100820552 562.377