Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04043 ATGGCCTCCCAGATTGGAGCAAAATCTAATGGAATATCACCAAACAATTTTCAGATAGAGATTCCTATCCATACCAAAAATGTTGAAAAAGAAAGCAACATTGACTACTTTCAAAGGGCACAGTGGCTTAGAGCAGCCACGTTGGGAGCCAATGATGGATTAATCACTGTTGCTTCGTTGATGATTGGTATTGGAGCTATAAAAGAAGATATCAGTGTAATGATCCTTACTGGTTTCGCCGGTTTAGTAGCCGGTGCTTGTAGCATGGCAATTGGTGAGTTTGTCTCTGTTTATACTCAATATGACATTGAGATAGCTCAAATGAAAAGAGAAAGAGAATTAGGAAATAATACTAATAATGATGAAGAGATGAGTAATGAAAAGGAGAAATTGCCAAATCCATTTCAAGCAGCATTAGCATCAGCACTTGCATTTTCTGTTGGTGCTCTAATGCCATTATTAGCAGCTGCATTTATAAAGAATCATAAGGTTAGAATGGGTGTTGTTGCTGCTGTGGTGAGTTTTGCATTGTTGGTGTTTGGATCAGTGGGAGCATTGATTGGAAAAACTCCAATTATGAGGTCTTGTGTTAGAGTTCTTATTGGTGGTTGGATGGCTATGGCCATTACTTTTGGTTTCACAAAATGGATTGGCACAACTGGACTTTGA 669 0.3857 MASQIGAKSNGISPNNFQIEIPIHTKNVEKESNIDYFQRAQWLRAATLGANDGLITVASLMIGIGAIKEDISVMILTGFAGLVAGACSMAIGEFVSVYTQYDIEIAQMKRERELGNNTNNDEEMSNEKEKLPNPFQAALASALAFSVGALMPLLAAAFIKNHKVRMGVVAAVVSFALLVFGSVGALIGKTPIMRSCVRVLIGGWMAMAITFGFTKWIGTTGL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04043 222 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 25 217 IPR008217 GO:0005384|GO:0030026
Trre8g04043 222 Pfam VIT family 43 123 IPR008217 GO:0005384|GO:0030026
Trre8g04043 222 Pfam VIT family 125 214 IPR008217 GO:0005384|GO:0030026
Trre8g04043 222 CDD Nodulin-21 41 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04043 Trre-Chr8 45257837 45258505 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04043 29 222 Nodulin-like Gene Family AT3G43660 65.464 2.06e-92 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04043 K22736 - gmx:100802489 304.679