Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04042 ATGGCTTCTCTTAGTAACCATAACAAAGAAATTAATGACATAGAATCAAAACCAAACCATGTTCAAGAAAATGAAGAAAACAACATCATTAAATATTCTCAAAGAGCACAATGGCTAAGAGCTGCTTTATTAGGAGCCAATGATGGTTTAGTATCAATAACATCACTAATGTTAGGTGTTGGAGCTGTGAATGAAGACATCAAAACAATGTTACTTGCCGGTTTCGCAGGACTAATTGCAGGAGCATGTAGTATGGGAATTGGAGAGTTTGTTTCTGTTTACACACAATTAGACATAATGGTAGCTCAAATGCAAAGAGAAAACAAAATAAGCAACACTATTATTGAAGATCATGAAAAGTTACTACCAAATCCTTTTCAAGCTGCTATAGCATCAGCAATTGCATTTTCTTTTGGTGCTACTGTTCCATTGTTAGGAGCAGCATTGGTAAGAGACTATAAGATAAGGTTGGTTATTGTTGTAGTTATGGCTAGTTTTGCATTGTTGGTTTTTGGAGGTGTAGGAGCAATGCTTGGTAAAACATCAGTGAAAAGGTCTTGTGTTAGAGTTGTGATTGGTGGTTGGATGGCTATGGCTATTACTTTTGGTTTGACAAAATTAGTTGGCTATAGTTCACTTTGA 642 0.3567 MASLSNHNKEINDIESKPNHVQENEENNIIKYSQRAQWLRAALLGANDGLVSITSLMLGVGAVNEDIKTMLLAGFAGLIAGACSMGIGEFVSVYTQLDIMVAQMQRENKISNTIIEDHEKLLPNPFQAAIASAIAFSFGATVPLLGAALVRDYKIRLVIVVVMASFALLVFGGVGAMLGKTSVKRSCVRVVIGGWMAMAITFGLTKLVGYSSL 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04042 213 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 15 208 IPR008217 GO:0005384|GO:0030026
Trre8g04042 213 MobiDBLite consensus disorder prediction 1 22 - -
Trre8g04042 213 Pfam VIT family 118 205 IPR008217 GO:0005384|GO:0030026
Trre8g04042 213 Pfam VIT family 39 111 IPR008217 GO:0005384|GO:0030026
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04042 Trre-Chr8 45246582 45247223 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04042 14 213 Nodulin-like Gene Family AT3G43660 58.128 2.37e-80 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04042 K22736 - gmx:100817158 258.455