Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04024 ATGGAAGAGGCAAATAAGAAGGGAGATGAAGAAGTTAAGTACCGTGGTGTTAGAAAAAGGCCATGGGGAAAATTTGGGGCAGAGATTAGGGATCCAACAAAACCTTCCGGTAGACAATGGTTAGGGACATTTGACACAGCTGAGGAAGCTGCGAGAGCTTATGATTGTGCTGCCATTCGTTTACGGGGTGCTCTTGCCATTCTTAATTTTCCTGATGAATATTATTTTCATCTTTCTTCTTTATCATCGTCGTCGTCATCATCATCCACTTGTGCCATTGCAAGCACTTCTTCTACACAACATAAGGAAGTTATTGAGTTTGAGTATTTAGATAATAAGGTGTTGGAAGATCTTCTTGCATCGTCAAACGAAGAGAATGAAAAGAAGAAATAA 393 0.3995 MEEANKKGDEEVKYRGVRKRPWGKFGAEIRDPTKPSGRQWLGTFDTAEEAARAYDCAAIRLRGALAILNFPDEYYFHLSSLSSSSSSSSTCAIASTSSTQHKEVIEFEYLDNKVLEDLLASSNEENEKKK 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04024 130 PANTHER DNA-BINDING DOMAIN 6 124 IPR044808 GO:0003700|GO:0009873
Trre8g04024 130 Pfam AP2 domain 13 63 IPR001471 GO:0003700|GO:0006355
Trre8g04024 130 Gene3D AP2/ERF domain 12 72 IPR036955 GO:0003700|GO:0006355
Trre8g04024 130 SMART rav1_2 13 77 IPR001471 GO:0003700|GO:0006355
Trre8g04024 130 FunFam Ethylene-responsive transcription factor 2 13 72 - -
Trre8g04024 130 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Trre8g04024 130 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Trre8g04024 130 ProSiteProfiles AP2/ERF domain profile. 13 71 IPR001471 GO:0003700|GO:0006355
Trre8g04024 130 CDD AP2 13 72 IPR001471 GO:0003700|GO:0006355
Trre8g04024 130 SUPERFAMILY DNA-binding domain 13 73 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04024 Trre-Chr8 45046301 45046693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04024 9 121 AP2-EREBP Transcription Factor Family AT3G23230 60.000 1.48e-41 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre8g04024 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04024 - - gmx:100807295 159.844