Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04020 ATGGGAGATCATAATAATAATAATAATAACCATGTTAATCTTCCACCCGGTTTTCGATTTTATCCAACAGATGAAGAGCTTGTGGTCCATTTTCTTCATCGAAAGGCTTCGCTTTTACCTTGTCATCCTGATGTTATTCCTGATCTTGACCTCTATCCATTTGATCCATGGCAACTTCAAGGAAGAGCTTTGGAAGAGGGAAATCAATGGTACTATTATAGTAGAAGGACACAAAATAGAATGACTAATAATGGTTATTGGATGCCAATGGGAATGGAAGAACAAGTTTTAACAAGCTCAAGTAATAAGAGAGTTGGTATGAAGAAATATTATGTTTTCCATATTGGTGAATCACCTGATGGTAACAAAACTAATTGGATAATGCAAGAGTATCGTCTTTCCGATTCCGCTTCTTCCTCTACTAGATCATCTTCCTCCAAAAGAAAATCAAAATCAGAACATAGTAGGTGGGTGATATGTCGAGTTTATGAACATGATGAAGATGATGATGAGGATGGAGATGGAACAGAATTGTCTTGTTTGGATGAAGTTTTCTTGTCATTAGATGATCTTGATGAAGTAAGCTTACCAAATTAG 597 0.3585 MGDHNNNNNNHVNLPPGFRFYPTDEELVVHFLHRKASLLPCHPDVIPDLDLYPFDPWQLQGRALEEGNQWYYYSRRTQNRMTNNGYWMPMGMEEQVLTSSSNKRVGMKKYYVFHIGESPDGNKTNWIMQEYRLSDSASSSTRSSSSKRKSKSEHSRWVICRVYEHDEDDDEDGDGTELSCLDEVFLSLDDLDEVSLPN 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04020 198 PANTHER NAC TRANSCRIPTION FACTOR 56 14 171 - -
Trre8g04020 198 FunFam NAC domain-containing protein 104 23 168 - -
Trre8g04020 198 Pfam No apical meristem (NAM) protein 15 133 IPR003441 GO:0003677|GO:0006355
Trre8g04020 198 SUPERFAMILY NAC domain 9 163 IPR036093 GO:0003677|GO:0006355
Trre8g04020 198 Gene3D NAC domain 23 169 IPR036093 GO:0003677|GO:0006355
Trre8g04020 198 ProSiteProfiles NAC domain profile. 14 165 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04020 Trre-Chr8 45023011 45023941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04020 1 164 NAC Transcription Factor Family AT1G61110 42.286 1.18e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre8g04020 NAM 3.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04020 - - gmx:100788893 313.538