Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04016 ATGAGCAACGGAAAGAGGAAGGTTTCGAAGATGAGGACTTTGAACGAGAACGTTCCACCGTTACAGATCGAGTTGGATGATGCGAGAGGACGATATCTTCAATCAACGACAATGAGTCCAGGTTTTCAATCGTACACCGAGAACGACTTCGGTTCGCCGCCGCTTGCACGATACTTCTACGCCGGTTCTCCGCTTTCCGGTAAATCCAGTGACTCCTTCAATTCTCCGCTTTTCGGCGCGAGCAAGTATAGGTCTACAAAAATGCAGCAGTACTCCGGCGCCGGCACTAGTTCAGGGAACAGTAGCTTCGGTTCTCGCGGTAGATTATCTCTCTCGCCGCTTTCTTCGATTGAGAACTTTGAGATAAAGTCACCGCCGATGTACAGAACGCCGGTGAAAGGTGACGAAGAAGTTATTGTGATGGATGATATTCAGGTGAGGCCAATGTCCGGAGGAAAGAGCGGAAGATCATCATCATCATCTTCTTCCGGTAGAGGCTCCTCTTCCTCCTCGTCGAGGAAGAGTGTGTTTAAGACTGATCTTTGCAGAGCGTGGGAAGATTCTGGAAACTGTCGCTATAACTCCAAGTGCCAGTTTATCCACGGAAGAGAGGAGCTCCATCCAAGTCGTCTCAGCATGAAGGGTAAATCTGAGGCACAGATGGGCAGACAATCTGCTAAACCAGGACCCTGGACATATAGCCCAAATAGCCGCGCTGTTAATAAACCTGCTGAAGTAGCTGAAGCTGAACATGCAGTCAGAAGACTCATAATTTCCCAACCAGCTTCACCTGAACCTCATTGTTCCCCTGCCAATTCCAACACCAGTAGTGATTGGTCACCAGTGGATGATGGCATTGAAGTTGTCCTCCCAAATGTTTCGGGGAGAGATCCCTCTAGGGAGGAAGTTGAAGCACACATTTTGGGTATTCTCAATCAGCGGACTACTAAAAGGAGACTACCAGTTTTTGCTGCAATTTGCAAGGGGCAGTAA 993 0.4864 MSNGKRKVSKMRTLNENVPPLQIELDDARGRYLQSTTMSPGFQSYTENDFGSPPLARYFYAGSPLSGKSSDSFNSPLFGASKYRSTKMQQYSGAGTSSGNSSFGSRGRLSLSPLSSIENFEIKSPPMYRTPVKGDEEVIVMDDIQVRPMSGGKSGRSSSSSSSGRGSSSSSSRKSVFKTDLCRAWEDSGNCRYNSKCQFIHGREELHPSRLSMKGKSEAQMGRQSAKPGPWTYSPNSRAVNKPAEVAEAEHAVRRLIISQPASPEPHCSPANSNTSSDWSPVDDGIEVVLPNVSGRDPSREEVEAHILGILNQRTTKRRLPVFAAICKGQ 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04016 330 MobiDBLite consensus disorder prediction 151 173 - -
Trre8g04016 330 MobiDBLite consensus disorder prediction 145 173 - -
Trre8g04016 330 ProSiteProfiles Zinc finger C3H1-type profile. 177 204 IPR000571 GO:0046872
Trre8g04016 330 PANTHER CCCH ZINC FINGER/TIS11-RELATED 63 211 IPR045877 GO:0003729
Trre8g04016 330 MobiDBLite consensus disorder prediction 265 281 - -
Trre8g04016 330 Gene3D - 168 209 - -
Trre8g04016 330 FunFam zinc finger CCCH domain-containing protein 15-like 170 209 - -
Trre8g04016 330 SUPERFAMILY CCCH zinc finger 175 207 IPR036855 GO:0046872
Trre8g04016 330 MobiDBLite consensus disorder prediction 208 236 - -
Trre8g04016 330 MobiDBLite consensus disorder prediction 260 284 - -
Trre8g04016 330 SMART c3hfinal6 176 203 IPR000571 GO:0046872
Trre8g04016 330 MobiDBLite consensus disorder prediction 1 25 - -
Trre8g04016 330 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 177 203 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04016 Trre-Chr8 44993600 44997878 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04016 178 208 C3H Transcription Factor Family AT1G68200 51.613 7.94e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre8g04016 zf-CCCH 6.8e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04016 - K18753 gmx:102665928 268.085