Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04015 ATGGAATACGCGATGAGCAACGGAAAGAGGAAGGTTTCGAAGATGAGGACTTTGAACGAGAACGTTCCACCGTTACAGATCGAGTTGGATGATGCGAGAGGACGATATCTTCAATCAACGACAATGAGTCCAGGTTTTCAATCGTACACCGAGAACGACTTCGGTTCGCCGCCGCTTGCACGATACTTCTACGCCGGTTCTCCGCTTTCCGGTAAATCCAGTGACTCCTTCAATTCTCCGCTTTTCGGCGCGAGCAAGTATAGGTCTACAAAAATGCAGCAGTACTCCGGCGCCGGCACTAGTTCAGGGAACAGTAGCTTCGGTTCTCGCGGTAGATTATCTCTCTCGCCGCTTTCTTCGATTGAGAACTTTGAGATAAAGTCACCGCCGATGTACAGAACGCCGGTGAAAGGTGACGAAGAAGTTATTGTGATGGATGATATTCAGGTGAGGCCAATGTCCGGAGGAAAGAGCGGAAGATCATCATCATCATCTTCTTCCGGTAGAGGCTCCTCTTCCTCCTCGTCGAGGAAGAGTGTGTTTAAGACTGATCTTTGCAGAGCGTGGGAAGATTCTGGAAACTGTCGCTATAACTCCAAGTGCCAGTTTATCCACGGAAGAGAGGAGCTCCATCCAAGTCGTCTCAGCATGAAGGGTAAATCTGAGGCACAGATGGGCAGACAATCTGCTAAACCAGGACCCTGGACATATAGCCCAAATAGCCGCGCTGTTAATAAACCTGCTGAAGTAGCTGAAGCTGAACATGCAGTCAGAAGACTCATAATTTCCCAACCAGCTTCACCTGAACCTCATTGTTCCCCTGCCAATTCCAACACCAGTAGTGATTGGTCACCAGTGGATGATGGCATTGAAGTTGTCCTCCCAAATGTTTCGGGGAGAGATCCCTCTAGGGAGGAAGTTGAAGCACACATTTTGGGTATTCTCAATCAGCGGACTACTAAAAGGAGACTACCAGTTTTTGCTGCAATTTGCAAGGGGCAGTAA 1005 0.4866 MEYAMSNGKRKVSKMRTLNENVPPLQIELDDARGRYLQSTTMSPGFQSYTENDFGSPPLARYFYAGSPLSGKSSDSFNSPLFGASKYRSTKMQQYSGAGTSSGNSSFGSRGRLSLSPLSSIENFEIKSPPMYRTPVKGDEEVIVMDDIQVRPMSGGKSGRSSSSSSSGRGSSSSSSRKSVFKTDLCRAWEDSGNCRYNSKCQFIHGREELHPSRLSMKGKSEAQMGRQSAKPGPWTYSPNSRAVNKPAEVAEAEHAVRRLIISQPASPEPHCSPANSNTSSDWSPVDDGIEVVLPNVSGRDPSREEVEAHILGILNQRTTKRRLPVFAAICKGQ 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04015 334 ProSiteProfiles Zinc finger C3H1-type profile. 181 208 IPR000571 GO:0046872
Trre8g04015 334 MobiDBLite consensus disorder prediction 155 177 - -
Trre8g04015 334 MobiDBLite consensus disorder prediction 149 177 - -
Trre8g04015 334 PANTHER CCCH ZINC FINGER/TIS11-RELATED 67 215 IPR045877 GO:0003729
Trre8g04015 334 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 181 207 IPR000571 GO:0046872
Trre8g04015 334 SMART c3hfinal6 180 207 IPR000571 GO:0046872
Trre8g04015 334 FunFam zinc finger CCCH domain-containing protein 15-like 174 213 - -
Trre8g04015 334 SUPERFAMILY CCCH zinc finger 179 211 IPR036855 GO:0046872
Trre8g04015 334 MobiDBLite consensus disorder prediction 269 285 - -
Trre8g04015 334 MobiDBLite consensus disorder prediction 264 288 - -
Trre8g04015 334 Gene3D - 172 213 - -
Trre8g04015 334 MobiDBLite consensus disorder prediction 212 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04015 Trre-Chr8 44993588 44997878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04015 182 212 C3H Transcription Factor Family AT1G68200 51.613 7.89e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre8g04015 zf-CCCH 6.9e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04015 - K18753 gmx:102665928 268.085