Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04001 ATGGATGCTTCATCTTTAACCTCAAGCCTAAGTATTTCAAATTCAAAGCAATTTCATCACCTTTCACAACTCTCAAGTAAACAACAAAGACCTTGTCAAGTGCACTTTAAAACAATTTCATGTAGAGCAACAAAGCTAGTTGAAGAAACCAAGAATGGATCAAATTTCTACAAAATGTTATCGGTGAATCCGAAAAACGCGACAATGGAAGAGATAAAGAGAGCTTATAGATCAATGGCACTTCAATATCATCCAGATGTGTGTCACGATCCTTCGATGAAAGAAGAATCAACGAGAATATTTGTTCGATTAAATGCGGCTTATGAAACTTTGTCGAATCCAATGCTTCGTGAACAATATGATAGTGAATTGGGATTGAAAAACAATATGATTAATATGAATAATATTGTTAATCAAGAGATTTGGAGAAGTAGGTGGCAAGAACAAGTGGTTGAGTTGAAGAAAAGGTCTTCTAGACGTACGGGACAAAAAGGAAGTAGAATGAGGACACAAAACATGAAAGATAGAAACTAA 534 0.3483 MDASSLTSSLSISNSKQFHHLSQLSSKQQRPCQVHFKTISCRATKLVEETKNGSNFYKMLSVNPKNATMEEIKRAYRSMALQYHPDVCHDPSMKEESTRIFVRLNAAYETLSNPMLREQYDSELGLKNNMINMNNIVNQEIWRSRWQEQVVELKKRSSRRTGQKGSRMRTQNMKDRN 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04001 177 CDD DnaJ 55 113 IPR001623 -
Trre8g04001 177 ProSiteProfiles dnaJ domain profile. 55 124 IPR001623 -
Trre8g04001 177 SMART dnaj_3 54 116 IPR001623 -
Trre8g04001 177 PRINTS DnaJ domain signature 76 91 IPR001623 -
Trre8g04001 177 PRINTS DnaJ domain signature 96 116 IPR001623 -
Trre8g04001 177 PRINTS DnaJ domain signature 58 76 IPR001623 -
Trre8g04001 177 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 13 175 - -
Trre8g04001 177 MobiDBLite consensus disorder prediction 153 177 - -
Trre8g04001 177 SUPERFAMILY Chaperone J-domain 37 120 IPR036869 -
Trre8g04001 177 Pfam DnaJ domain 55 121 IPR001623 -
Trre8g04001 177 ProSitePatterns Nt-dnaJ domain signature. 101 120 IPR018253 -
Trre8g04001 177 Gene3D DnaJ domain 42 149 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04001 Trre-Chr8 44904746 44905279 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04001 57 122 C2H2 Transcription Factor Family AT1G74250 41.176 1.01e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04001 - - gmx:100811478 208.379