Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03988 ATGTCTCATTTCGGTAGGTCAGGACCTCCAGACATCGCCGATACCTACTCTCTCCTCGTCCTCAACATCACTTTCCGTACAACCGCCGATGACCTATTTCCTCTGTTTGATAAGTACGGCAAGGTTGTTGACATCTTCATCCCTAAAGATCGAAGAACTGGTGAATCGAGAGGTTTCGCTTTTGTGCGTTATAAGTATGCTGATGAAGCTTCCAAGGCTGTTGATAGGCTCGACGGAAGAATGGTTGATGGTCGTGAAATAACTGTTCAGTTTGCAAAATATGGTCCTAATGCTGAGAGAATTCAGAAAGGAAGGATTATTGAAACATCCCCAAGATCAAAGAGCTCAAGGAGCCGCAGTCCCAGCAGGAGAAGTAGGAATCGTGATGATTACAAAGATAAGGACTACAGGAGGAGAAGTCGCAGCAGGAGTTATGATAGGCATGAACGTGACAGGTACCGTGGGAGAGACAGGGACTATCGTCGCCGAAGCAGAAGCCGCAGTGCCAGTCCTGATCGCAAGGGTCGTGGAAGGGGGCGTCATGATGATGAGCGTCATAGTAGAAGCCGAAGCAAATCAGTGGACAGCCGCTCCCCTGCACGACGCAGTCCTAGTCCTAAAAGGAGCCCTTCTCCAAAGAGGAGTATTTCCCCTCAAAAGAGTGCTTCACCCAGGAAAAGTCCACGTCATGAAAGTCCTGATAATCGTAGCCGCGAAGGAAAGTCTCCTACTCCTCGCAGTGTCTCACCACGAGGTCGCCCTGATGCTTCCCGGAGCCCGTCTCCTCGAAATTCAAATGGTGATGTAAGTAAAGTAATGAATAAGCTGTCCTTCATGAAGTATTCCAAAGACACCTCAACAAGTGTACCTGTTACTGTCTTGATAATATTGGATGATTTGGTCAATGTGAATGGTCTTATCAGAGTCTTGGAAAGATTTTATGATCTAAGTGCAGTTTGGTAG 963 0.4735 MSHFGRSGPPDIADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGPNAERIQKGRIIETSPRSKSSRSRSPSRRSRNRDDYKDKDYRRRSRSRSYDRHERDRYRGRDRDYRRRSRSRSASPDRKGRGRGRHDDERHSRSRSKSVDSRSPARRSPSPKRSPSPKRSISPQKSASPRKSPRHESPDNRSREGKSPTPRSVSPRGRPDASRSPSPRNSNGDVSKVMNKLSFMKYSKDTSTSVPVTVLIILDDLVNVNGLIRVLERFYDLSAVW 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03988 320 MobiDBLite consensus disorder prediction 198 223 - -
Trre8g03988 320 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Trre8g03988 320 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Trre8g03988 320 SMART rrm1_1 17 90 IPR000504 GO:0003723
Trre8g03988 320 MobiDBLite consensus disorder prediction 122 197 - -
Trre8g03988 320 Gene3D - 5 103 IPR012677 -
Trre8g03988 320 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 274 - -
Trre8g03988 320 CDD RRM_SRSF2_SRSF8 18 90 - -
Trre8g03988 320 MobiDBLite consensus disorder prediction 100 270 - -
Trre8g03988 320 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Trre8g03988 320 SUPERFAMILY RNA-binding domain, RBD 9 102 IPR035979 GO:0003676
Trre8g03988 320 MobiDBLite consensus disorder prediction 224 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03988 Trre-Chr8 44775918 44778236 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03988 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 34.177 4.10e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03988 K12891 - gmx:100778928 322.013