Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03987 ATGTCTCATTTCGGTAGGTCAGGACCTCCAGACATCGCCGATACCTACTCTCTCCTCGTCCTCAACATCACTTTCCGTACAACCGCCGATGACCTATTTCCTCTGTTTGATAAGTACGGCAAGGTTGTTGACATCTTCATCCCTAAAGATCGAAGAACTGGTGAATCGAGAGGTTTCGCTTTTGTGCGTTATAAGTATGCTGATGAAGCTTCCAAGGCTGTTGATAGGCTCGACGGAAGAATGGTTGATGGTCGTGAAATAACTGTTCAGTTTGCAAAATATGGTCCTAATGCTGAGAGAATTCAGAAAGGAAGGATTATTGAAACATCCCCAAGATCAAAGAGCTCAAGGAGCCGCAGTCCCAGCAGGAGAAGTAGTAGGAATCGTGATGATTACAAAGATAAGGACTACAGGAGGAGAAGTCGCAGCAGGAGTTATGATAGGCATGAACGTGACAGGTACCGTGGGAGAGACAGGGACTATCGTCGCCGAAGCAGAAGCCGCAGTGCCAGTCCTGATCGCAAGGGTCGTGGAAGGGGGCGTCATGATGATGAGCGTCATAGTAGAAGCCGAAGCAAATCAGTGGACAGCCGCTCCCCTGCACGACGCAGTCCTAGTCCTAAAAGGAGCCCTTCTCCAAAGAGGAGTATTTCCCCTCAAAAGAGTGCTTCACCCAGGAAAAGTCCACGTCATGAAAGTCCTGATAATCGTAGCCGCGAAGGAAAGTCTCCTACTCCTCGCAGTGTCTCACCACGAGGTCGCCCTGATGCTTCCCGGAGCCCGTCTCCTCGAAATTCAAATGGTGATGTAAGTAAAGTAATGAATAAGCTGTCCTTCATGAAGTATTCCAAAGACACCTCAACAAGTGTACCTGTTACTGTCTTGATAATATTGGATGATTTGGTCAATGTGAATGGTCTTATCAGAGTCTTGGAAAGATTTTATGATCTAAGTGCAGTTTGGTAG 966 0.4731 MSHFGRSGPPDIADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGPNAERIQKGRIIETSPRSKSSRSRSPSRRSSRNRDDYKDKDYRRRSRSRSYDRHERDRYRGRDRDYRRRSRSRSASPDRKGRGRGRHDDERHSRSRSKSVDSRSPARRSPSPKRSPSPKRSISPQKSASPRKSPRHESPDNRSREGKSPTPRSVSPRGRPDASRSPSPRNSNGDVSKVMNKLSFMKYSKDTSTSVPVTVLIILDDLVNVNGLIRVLERFYDLSAVW 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03987 321 MobiDBLite consensus disorder prediction 123 198 - -
Trre8g03987 321 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Trre8g03987 321 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Trre8g03987 321 Gene3D - 5 104 IPR012677 -
Trre8g03987 321 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 275 - -
Trre8g03987 321 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Trre8g03987 321 SMART rrm1_1 17 90 IPR000504 GO:0003723
Trre8g03987 321 MobiDBLite consensus disorder prediction 225 242 - -
Trre8g03987 321 MobiDBLite consensus disorder prediction 100 271 - -
Trre8g03987 321 MobiDBLite consensus disorder prediction 199 224 - -
Trre8g03987 321 CDD RRM_SRSF2_SRSF8 18 90 - -
Trre8g03987 321 SUPERFAMILY RNA-binding domain, RBD 9 102 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03987 Trre-Chr8 44775918 44778236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03987 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 34.177 4.06e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03987 K12891 - gmx:100778928 318.161