Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre8g03987 | ATGTCTCATTTCGGTAGGTCAGGACCTCCAGACATCGCCGATACCTACTCTCTCCTCGTCCTCAACATCACTTTCCGTACAACCGCCGATGACCTATTTCCTCTGTTTGATAAGTACGGCAAGGTTGTTGACATCTTCATCCCTAAAGATCGAAGAACTGGTGAATCGAGAGGTTTCGCTTTTGTGCGTTATAAGTATGCTGATGAAGCTTCCAAGGCTGTTGATAGGCTCGACGGAAGAATGGTTGATGGTCGTGAAATAACTGTTCAGTTTGCAAAATATGGTCCTAATGCTGAGAGAATTCAGAAAGGAAGGATTATTGAAACATCCCCAAGATCAAAGAGCTCAAGGAGCCGCAGTCCCAGCAGGAGAAGTAGTAGGAATCGTGATGATTACAAAGATAAGGACTACAGGAGGAGAAGTCGCAGCAGGAGTTATGATAGGCATGAACGTGACAGGTACCGTGGGAGAGACAGGGACTATCGTCGCCGAAGCAGAAGCCGCAGTGCCAGTCCTGATCGCAAGGGTCGTGGAAGGGGGCGTCATGATGATGAGCGTCATAGTAGAAGCCGAAGCAAATCAGTGGACAGCCGCTCCCCTGCACGACGCAGTCCTAGTCCTAAAAGGAGCCCTTCTCCAAAGAGGAGTATTTCCCCTCAAAAGAGTGCTTCACCCAGGAAAAGTCCACGTCATGAAAGTCCTGATAATCGTAGCCGCGAAGGAAAGTCTCCTACTCCTCGCAGTGTCTCACCACGAGGTCGCCCTGATGCTTCCCGGAGCCCGTCTCCTCGAAATTCAAATGGTGATGTAAGTAAAGTAATGAATAAGCTGTCCTTCATGAAGTATTCCAAAGACACCTCAACAAGTGTACCTGTTACTGTCTTGATAATATTGGATGATTTGGTCAATGTGAATGGTCTTATCAGAGTCTTGGAAAGATTTTATGATCTAAGTGCAGTTTGGTAG | 966 | 0.4731 | MSHFGRSGPPDIADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGPNAERIQKGRIIETSPRSKSSRSRSPSRRSSRNRDDYKDKDYRRRSRSRSYDRHERDRYRGRDRDYRRRSRSRSASPDRKGRGRGRHDDERHSRSRSKSVDSRSPARRSPSPKRSPSPKRSISPQKSASPRKSPRHESPDNRSREGKSPTPRSVSPRGRPDASRSPSPRNSNGDVSKVMNKLSFMKYSKDTSTSVPVTVLIILDDLVNVNGLIRVLERFYDLSAVW | 321 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre8g03987 | 321 | MobiDBLite | consensus disorder prediction | 123 | 198 | - | - | |
Trre8g03987 | 321 | FunFam | Serine/arginine-rich splicing factor SC35 | 4 | 103 | - | - | |
Trre8g03987 | 321 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 18 | 88 | IPR000504 | GO:0003723 | |
Trre8g03987 | 321 | Gene3D | - | 5 | 104 | IPR012677 | - | |
Trre8g03987 | 321 | PANTHER | GLYCINE-RICH RNA-BINDING PROTEIN RZ1A | 14 | 275 | - | - | |
Trre8g03987 | 321 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 16 | 94 | IPR000504 | GO:0003723 | |
Trre8g03987 | 321 | SMART | rrm1_1 | 17 | 90 | IPR000504 | GO:0003723 | |
Trre8g03987 | 321 | MobiDBLite | consensus disorder prediction | 225 | 242 | - | - | |
Trre8g03987 | 321 | MobiDBLite | consensus disorder prediction | 100 | 271 | - | - | |
Trre8g03987 | 321 | MobiDBLite | consensus disorder prediction | 199 | 224 | - | - | |
Trre8g03987 | 321 | CDD | RRM_SRSF2_SRSF8 | 18 | 90 | - | - | |
Trre8g03987 | 321 | SUPERFAMILY | RNA-binding domain, RBD | 9 | 102 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre8g03987 | Trre-Chr8 | 44775918 | 44778236 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre8g03987 | 14 | 92 | Eukaryotic Initiation Factors Gene Family | AT3G11400 | 34.177 | 4.06e-09 | 55.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre8g03987 | K12891 | - | gmx:100778928 | 318.161 |