Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03986 ATGGATTCTGCGTTATCCGTCACCACAACGGCGCAGTTTCTACTCTTCAGAGCACTCCACCGTCATTTCTCCGGTGCACCTTCTCGTTCGCTTCTCCGTCGCCGCAACCTCAAATACGCTGTTACTTCATACAATAACCGTTTTCGTATTCCGTGTTCATCCACCTCTTTCACTTCTGTGCCGTTATCGCCCTCGCTTCGTAACTTCCACGCGCTTCTTTCACGAAATTCTTGCCGTACGCGCTGCGTTCCGAGCTCTGCTGCTTCTTTTGGTTCTTCTGCCGGTGGTGGAAATGGTGGTGCTGGAGTTGGAAATGGCGGAGGAGGTGGTGGTGGTGGTTCTGGTGGTGAGTCTGGAGATGTTAGAATCAATTTGGTTGGAGATGCGGCTCAAGAGCTTTCATCTCTTTCGCCTGATGTTATCATTCTTGATGTTTCCGGAATGGTGTGTGGGGGATGTGCAGCATCTGTGAAAAGGATTCTGGAAAGTCAGCCACAAGTGTCGTCTGCTAGTGTAAATTTAACAACAGAGACAGTAATAGTTTGGCCTGTATCTGAAGCAAAAGCTGCACCAAATTGGCAAAAGCAATTAGGGAAGACACTTGCAGAACATTTAACTAGCTGTGGTTTCAATTCTTGCCTTCGAGATTCAACAAGAGAAAATTTCCTACAAATTTTTGAAAGAAAGATGGAGGAAAGAAATAGACAATTAAAAGAAAGTGGTCGTGAGCTAGCTGTTTCCTGGGCTCTTTGTGCTGTGTGTCTTGTTGGCCATCTCTCCCATCTCTTTGCAGCAAAGGCACCATGGATCCATGCATTTCATTCTGTCGGGTTTCATATATCCTTGTGTTTGCTTACATTACTTGGCCCCGGCCGCCAACTTATTCTTGATGGCTTAAAAAGCCTTTTTAAAAGGGCGCCAAACATGAACAGCTTAGTTGGTCTTGGGGCTTTGTCATCATTCACAGTCAGTTCATTTGCTGTTTTGCTGCCGAAATTGGGTTGGAAGGCATTTTTTGAGGAACCTATTATGCTGATTGCATTTGTCTTGTTGGGAAGGAATCTTGAACAGAGAGCTAAAATTAAAGCAACCAGTGATATGACAGGACTTCTTAGCATATTGCCATCTAAAGCTCGCCTTCTAGTTAATAACGGGGAAACAGATGCGGCCTCAGTTGTTGAAGTTCCTTCTGACAGTCTTTCCGTTGAAGACAAAATTATCATATTACCCGGAGATCGTATTCCAGCTGATGGAATTGTGAGAGCTGGTAGAAGTAGTGTAGATGAGTCAAGTTTCACCGGGGAGCCGCTGCCAGTAACCAAAGAACTTGGGAGTGAGGTTGCAGCTGGAAGTATAAATCTTAATGGAACTCTTACAATAGAGGTGCGGAGACCAGGGGGTGAGACTGCTATAGGAGACATTATTCGTCTAGTTGAAGAGGCACAAAGTAGAGAAGCTCCTGTACAACGGTTGGCTGACAAGGTAGCAGGATACTTCACGTATGGAGTAATGGCAATCTCTGTTAGCACATTTACATTTTGGAGTGTGCTTGGCCCACAGATTTTACCTGCTGCTGTATACCAAGGAAGTGCAGTTTCGCTGGCTTTGCAGCTTGCATGCAGTGTTCTGGTTATTGCTTGTCCATGTGCACTTGGGTTAGCCACACCTACTGCTGTGCTGGTTGGAACTTCTTTGGGAGCTAAAAGAGGATTACTTTTGCGTGGTGGAAACATTCTAGAGAAGTTTGCCATGGTAAACACTGTTGTGTTTGACAAAACAGGGACCCTCACGATTGGTAAACCTGTTGTGACAAAGATTGTCACTCCCACGTACATAGAAAATGCAAATTCAAGCCAAACTAAAATAAATGCTTTGTCTGATATTGAAGTTCTGAGGTTAGCAGCTGCTGTAGAATCAAACTCAGTACATCCAGTTGGGAAAGCAATTGTTGATGCCGCTCAGGCAGTTAATTGTCATGACGCTAAGGTAACAGATGAAACATTCCTGGAAGAACCTGGATCTGGTGTTGTTGCAACCGTAAATAACAAAAAGGTTTCCGTTGGGACATTGGAATGGATAACCAGGCATGGAGTTAACAACAGCATACATCAAGAAGTGGAGTGTAAAAACCAATCCTTTGTCTATGTTGGAGTTGATGATACTTTGGCTGGCCAGATTTATTTTGAAGATGAGATAAGGAAAGATGCAAGACATGTTGTTGACACGTTATCTAAGCAAGGTATTGATGTGTACATGCTGTCTGGAGACAAAAGGAATGCAGCTGAATATGTTGCATCTCTTGTTGGGATTCCCAAAGCAAAGGTGCTCTCTGAAGTGAAACCAGAGGAGAAGAACAAGTTCATAAAGGAACTTCAGAAAGATAAGAAAGTTGTAGCTATGGTTGGTGATGGAATTAACGATGCAGCTGCCCTGGCTTCTTCACATATAGGTATTGCATTGGGTGGAGGTGTTGGAGCTGCCAGTGAGGTGTCTTCCATTGTATTGATGCACAACCATCTCTCACAGCTGCTTGATGCTTTGGAGCTTAGCAGGCTAACCATGAATACTGTAAAGCAAAATCTTTGGTGGGCTTTCATATACAACATTGTAGGGATTCCAATTGCAGCTGGAGCGTTATTGCCTGTAAATGGTACCATGCTGACTCCATCAATTGCAGGGGCTCTCATGGGGTTGAGTTCCATTGGCGTAATGAGTAACTCATTACTTTTGAGATTCAAGTTTTCCTTAAAGCAACAACAAATACATGGCACGTTGCCAAAGACCAAAACCTATGTTGAATCTGATCTGGCTCGTGGAAACAAGAAAATGAAGTATTCAAATTAG 2844 0.4388 MDSALSVTTTAQFLLFRALHRHFSGAPSRSLLRRRNLKYAVTSYNNRFRIPCSSTSFTSVPLSPSLRNFHALLSRNSCRTRCVPSSAASFGSSAGGGNGGAGVGNGGGGGGGGSGGESGDVRINLVGDAAQELSSLSPDVIILDVSGMVCGGCAASVKRILESQPQVSSASVNLTTETVIVWPVSEAKAAPNWQKQLGKTLAEHLTSCGFNSCLRDSTRENFLQIFERKMEERNRQLKESGRELAVSWALCAVCLVGHLSHLFAAKAPWIHAFHSVGFHISLCLLTLLGPGRQLILDGLKSLFKRAPNMNSLVGLGALSSFTVSSFAVLLPKLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKATSDMTGLLSILPSKARLLVNNGETDAASVVEVPSDSLSVEDKIIILPGDRIPADGIVRAGRSSVDESSFTGEPLPVTKELGSEVAAGSINLNGTLTIEVRRPGGETAIGDIIRLVEEAQSREAPVQRLADKVAGYFTYGVMAISVSTFTFWSVLGPQILPAAVYQGSAVSLALQLACSVLVIACPCALGLATPTAVLVGTSLGAKRGLLLRGGNILEKFAMVNTVVFDKTGTLTIGKPVVTKIVTPTYIENANSSQTKINALSDIEVLRLAAAVESNSVHPVGKAIVDAAQAVNCHDAKVTDETFLEEPGSGVVATVNNKKVSVGTLEWITRHGVNNSIHQEVECKNQSFVYVGVDDTLAGQIYFEDEIRKDARHVVDTLSKQGIDVYMLSGDKRNAAEYVASLVGIPKAKVLSEVKPEEKNKFIKELQKDKKVVAMVGDGINDAAALASSHIGIALGGGVGAASEVSSIVLMHNHLSQLLDALELSRLTMNTVKQNLWWAFIYNIVGIPIAAGALLPVNGTMLTPSIAGALMGLSSIGVMSNSLLLRFKFSLKQQQIHGTLPKTKTYVESDLARGNKKMKYSN 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03986 947 NCBIfam heavy metal translocating P-type ATPase 309 910 IPR027256 GO:0006812|GO:0016020|GO:0019829
Trre8g03986 947 FunFam Copper-transporting ATPase PAA1, chloroplastic 139 214 - -
Trre8g03986 947 Pfam Heavy-metal-associated domain 143 204 IPR006121 GO:0046872
Trre8g03986 947 Pfam haloacid dehalogenase-like hydrolase 585 813 - -
Trre8g03986 947 ProSitePatterns Heavy-metal-associated domain. 145 174 IPR017969 GO:0046872
Trre8g03986 947 Coils Coil 223 243 - -
Trre8g03986 947 SFLD C1.7: P-type atpase like 572 851 - -
Trre8g03986 947 PRINTS Copper-transporting ATPase signature 342 361 - -
Trre8g03986 947 PRINTS Copper-transporting ATPase signature 778 795 - -
Trre8g03986 947 PRINTS Copper-transporting ATPase signature 294 313 - -
Trre8g03986 947 PRINTS Copper-transporting ATPase signature 572 587 - -
Trre8g03986 947 Gene3D - 359 482 - -
Trre8g03986 947 FunFam Copper-transporting ATPase PAA1 chloroplastic 717 868 - -
Trre8g03986 947 SFLD p-type atpase 572 851 IPR044492 -
Trre8g03986 947 ProSitePatterns E1-E2 ATPases phosphorylation site. 591 597 IPR018303 -
Trre8g03986 947 FunFam Copper-transporting ATPase 1, putative 360 482 - -
Trre8g03986 947 NCBIfam HAD-IC family P-type ATPase 347 613 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre8g03986 947 NCBIfam HAD-IC family P-type ATPase 633 880 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre8g03986 947 SUPERFAMILY HAD-like 587 907 IPR036412 -
Trre8g03986 947 CDD P-type_ATPase_Cu-like 242 912 - -
Trre8g03986 947 FunFam Copper-transporting ATPase PAA1 chloroplastic 600 732 - -
Trre8g03986 947 SUPERFAMILY Calcium ATPase, transduction domain A 391 478 IPR008250 -
Trre8g03986 947 PANTHER ATP7, ISOFORM B 134 912 - -
Trre8g03986 947 SUPERFAMILY HMA, heavy metal-associated domain 141 184 IPR036163 GO:0046872
Trre8g03986 947 ProSiteProfiles Heavy-metal-associated domain profile. 139 206 IPR006121 GO:0046872
Trre8g03986 947 Gene3D - 580 851 IPR023214 -
Trre8g03986 947 SUPERFAMILY Calcium ATPase, transmembrane domain M 343 889 IPR023298 -
Trre8g03986 947 NCBIfam copper-translocating P-type ATPase 291 911 - -
Trre8g03986 947 PRINTS P-type cation-transporting ATPase superfamily signature 589 603 - -
Trre8g03986 947 PRINTS P-type cation-transporting ATPase superfamily signature 428 442 - -
Trre8g03986 947 PRINTS P-type cation-transporting ATPase superfamily signature 824 836 - -
Trre8g03986 947 PRINTS P-type cation-transporting ATPase superfamily signature 801 820 - -
Trre8g03986 947 PRINTS P-type cation-transporting ATPase superfamily signature 746 756 - -
Trre8g03986 947 Gene3D - 600 732 IPR023299 GO:0000166
Trre8g03986 947 Pfam E1-E2 ATPase 373 569 - -
Trre8g03986 947 CDD HMA 143 199 IPR006121 GO:0046872
Trre8g03986 947 Gene3D - 140 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03986 Trre-Chr8 44754293 44770448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03986 291 911 Primary Pumps ATPases AT1G63440 39.097 3.65e-122 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03986 K17686 - gmx:100796210 1437.94