Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03984 ATGGCGGACCCTCCTTCTCGCCAATTGCCTACTCGACCAGATTTTCAGCAGTTACAATTTGAAGCCCAGCATCGGTGGTTACGCCCTGCAGAAATATTGGAAATTCTTCGTAATTATCAGATGTTTCAAATCACACCTGAACCGCCTAGCAGGCCACCAAGTGGATCACTTTTTCTTTTTGATCGGAAGGTTTTGAGATACTTCAGAAAGGATGGACACAACTGGAGAAAGAAGAGAGACGGAAAAACTGTGAGGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTATTGATGTGCTACACTGCTATTATGCCCATGGAGAAGAGAATGAAAATTTTCAGAGGCGAAGCTATTGGATGCTTGAACCGGATATGATGCATATAGTATTTGTCCACTACTTGGATGTTAAGGTTAACAAGACCAATATTGGTGCAAGCACAGATACTAAAGGGGTTACATCAGATTCCCAAAACGGCAGTTCTGTGTCATCTGGCTTTCCTGCAAATTATGGTAACATGCCATCGGGAAGTGCGGATTCCATGAGCCCAACAAGCACTTTAACTTCTTTGTGTGAAGATGCAGATTCAGAGGATATTCATCAAGCAAGCTCGGGATTTCACACTCTTCGTGAGTCACAAAATCTGGGGAATGGTCCACTTATGGATAAGGTTGATGCTCGTTCAAATAGTTCATATCTTACACATCCCTTTTCAGGTGATCATGGTCAGTTATCGTTTTCAGGACCAAATTACCTCCCACTTGTTCAGGGGGGTAAATCCAATCAAAGTGATGCTACATATGCCGAGGATCAGAGAGCACTTAACATAGCATCCTGGGACAATGTCATGGAAAAATCTGCAGGATTGCATACTGATCCCTCCTTTGTATCATCTAATTCTATTCCATCGAGTTCAATGGGTAACATCCTTGAACAAGAGCATTCTGTCTTTACTGAAGGAAGGGCCTCACAGTCTCTCCAATCAAATTGGCAGATTCCTTTTGAAGACAATACAGGAGAATTTCCTAAATGGAGCTTTACTCAATCATTGAATTTGGAATTTGAATCTGATTATTCAACTGAACTACTGGGAAAAGAAACTAATAATGCAAGTTCAGAAATTGGTCCTGACCTATTTTGTTTTAATTTTGAGCCAAAAGAACAGCCTGTGCAGCAAAACTTGTCAAAGGAGCATACACCTGCACAATCTCAGGATGCACTGAAATCTGAGCGTGGAATTCATGGTGAACACAGTGCCAATTATTCCCTGAACATGAAGCATGCTTTTATGGAGGCTGAAGAGAGCCTGAAGAAGGTCGATAGCTTCTCTAGGTGGATTTCTAAAGAACTTGCAGCGGTGGATGATCTGCACATGCAGTCTTCCCCTGGTATTTCATGGGGCACGGATGAATGTGGGAATGTGATAGATGATACCTCATTGAACCCGTCCCTATCTCAAGACCAGCTGTTTAGCATACATGATTTTTCCCCTAAATGGGCTTATGCTGGATCAGAAATTGAGGTGTTGATTATTGGAACATTTTTGAAGAGTAAACCAGAGGTGGCAACATGTAACTGGTCCTGTATGTTTGGGGAAGTGGAAGTTCCAGCTACGGTTTTAGCTAATGGAATTCTGTCCTGTCAAGCTCCACCGCATGAGATTGGACGGATCCCTTTCTATGTAACCTTTTCCAATAGATTTGCTTGTAGTGAAGTTCGGGAATTTGAGTTTAAAGAGGGCTTTACTAGGAATGTGGATGTGGCAGATTTTTTTAACAGCTCAACTGAAATGATGCTTCATTTGCAACTGGAAGAGTTACTTACTTTGAATTCAGTGCATCTTTCAGATCAAGTTTTTGAGGATGATGTGGAGAAAAGAAACTTGATTCTTAAGCTTATTTCACTGAAAGAGGAAGAGGAGTATTCGAGTAATGAAGAGCCAACTGGAGAGATGGATATATCAAAACACAGGTTGGAGGTGCATATATTTCACAGGCAGGTTAAGGAGAAGCTGTACTCGTGGCTTCTTCACAAAGTAACCGAAACTGGTAAAGGGCCTCATGTGTTTGATAAAAATGGGCAATGTGTATTACATTTAGTTGCTGCTCTTGGTTATGATTGGGCCATAGCACCAATTGTAACTTCTGGAGTTAATATCAACTTCCGTGATGTGAATGGATGTACGGCTCTACACTGGGCTGCATCCTGTGACAGGGAGCGAACGGTTGTTCTCCTTGTCTCCATGGGTGCCGCTGCTGGAGCATTGACTGATCCATGTCCAGAATTCCCTTCAGGAAGAACACCTGCAGATCTTGCTTCTAGCTATGGCCACAAAGGAATTTCGGGTTTTCTTGCCGAGTCATTATTAACTAGCCACCTTGAATCACTCACAGTGGATGATGTAAATAAAGATGGTGCAAAAGAAACTTTGGGAATGAAAGCAGTACAAACGATTTCAGAACGAGTTGCGACACCTGTGTTTAGTGGTGATTTACCAGATGCTATCTGCCTTAAGGACTCTCTCGATGCTGTCCGTAATGCTACACAAGCTGCTGATAGAATACATCAAGTATATAGAATGCAATCATTTCAAAGAAAACAGTTAGCTCAGTATGAAGGCGATGATGAGTTTGGATTGTCAGATCAGCAAGCTCTTTCGCTTCTAGCCTCTAAGGCATGCAAATCTGGTCATGGGGATAGTTCAGTCAATGCTGCTGCAATACAAATACAGAAAAAATTCCGTGGCTGGACAAAGAGAAAAGAATTCCTGTTCATTCGTCAGAGAGTTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAAGTAAGAAAGAAGTATAAATCATTCATCTGGTCCGTGGGAATCCTGGAGAAGGTTGTATTACGGTGGAGGCGTAAGGGCAGGGGTTTACGTGGATTTCGACCAGATGCTGTTAATAAGGCCCCCAACCAACCAAGCAACGATCCTGTGAAGGAGGATGACGATTATGATTTTCTCAAGGAAGGGAGGAAACAGAGTGAAGAAAGGTTCCAAAAGGCCCTTTCAAGGGTTAAGTCCATGGTTCAGTATCCAGAGGCCCGGGCCCAGTACAGGCGACTGCTAAATGTAGTAGACGATTTCCGTCAAACCAAGCAGGCATCTAGTTTGAGTCCGATAAATTCGGAAGAGGCAGTCGATGGTGTGGAAGATTTGATTGATATCGACATGCTTTTAGATGATGATAATTTCTTACCTATAGTATTCGATTGA 3243 0.4255 MADPPSRQLPTRPDFQQLQFEAQHRWLRPAEILEILRNYQMFQITPEPPSRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLDVKVNKTNIGASTDTKGVTSDSQNGSSVSSGFPANYGNMPSGSADSMSPTSTLTSLCEDADSEDIHQASSGFHTLRESQNLGNGPLMDKVDARSNSSYLTHPFSGDHGQLSFSGPNYLPLVQGGKSNQSDATYAEDQRALNIASWDNVMEKSAGLHTDPSFVSSNSIPSSSMGNILEQEHSVFTEGRASQSLQSNWQIPFEDNTGEFPKWSFTQSLNLEFESDYSTELLGKETNNASSEIGPDLFCFNFEPKEQPVQQNLSKEHTPAQSQDALKSERGIHGEHSANYSLNMKHAFMEAEESLKKVDSFSRWISKELAAVDDLHMQSSPGISWGTDECGNVIDDTSLNPSLSQDQLFSIHDFSPKWAYAGSEIEVLIIGTFLKSKPEVATCNWSCMFGEVEVPATVLANGILSCQAPPHEIGRIPFYVTFSNRFACSEVREFEFKEGFTRNVDVADFFNSSTEMMLHLQLEELLTLNSVHLSDQVFEDDVEKRNLILKLISLKEEEEYSSNEEPTGEMDISKHRLEVHIFHRQVKEKLYSWLLHKVTETGKGPHVFDKNGQCVLHLVAALGYDWAIAPIVTSGVNINFRDVNGCTALHWAASCDRERTVVLLVSMGAAAGALTDPCPEFPSGRTPADLASSYGHKGISGFLAESLLTSHLESLTVDDVNKDGAKETLGMKAVQTISERVATPVFSGDLPDAICLKDSLDAVRNATQAADRIHQVYRMQSFQRKQLAQYEGDDEFGLSDQQALSLLASKACKSGHGDSSVNAAAIQIQKKFRGWTKRKEFLFIRQRVVKIQAHVRGHQVRKKYKSFIWSVGILEKVVLRWRRKGRGLRGFRPDAVNKAPNQPSNDPVKEDDDYDFLKEGRKQSEERFQKALSRVKSMVQYPEARAQYRRLLNVVDDFRQTKQASSLSPINSEEAVDGVEDLIDIDMLLDDDNFLPIVFD 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03984 1080 SUPERFAMILY E set domains 491 576 IPR014756 -
Trre8g03984 1080 ProSiteProfiles IQ motif profile. 902 930 IPR000048 GO:0005515
Trre8g03984 1080 MobiDBLite consensus disorder prediction 972 992 - -
Trre8g03984 1080 Gene3D - 900 947 - -
Trre8g03984 1080 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Trre8g03984 1080 Gene3D Immunoglobulins 484 579 IPR013783 -
Trre8g03984 1080 Gene3D - 659 791 IPR036770 -
Trre8g03984 1080 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1041 - -
Trre8g03984 1080 SMART iq_5 900 922 IPR000048 GO:0005515
Trre8g03984 1080 SMART iq_5 923 945 IPR000048 GO:0005515
Trre8g03984 1080 ProSiteProfiles Ankyrin repeat profile. 724 756 IPR002110 GO:0005515
Trre8g03984 1080 FunFam Calmodulin-binding transcription activator 2 900 948 - -
Trre8g03984 1080 SUPERFAMILY Ankyrin repeat 679 785 IPR036770 -
Trre8g03984 1080 FunFam Calmodulin-binding transcription activator 2 484 580 - -
Trre8g03984 1080 Pfam IQ calmodulin-binding motif 926 945 IPR000048 GO:0005515
Trre8g03984 1080 Pfam IQ calmodulin-binding motif 903 921 IPR000048 GO:0005515
Trre8g03984 1080 MobiDBLite consensus disorder prediction 146 188 - -
Trre8g03984 1080 ProSiteProfiles IQ motif profile. 924 948 IPR000048 GO:0005515
Trre8g03984 1080 Pfam IPT/TIG domain 491 564 IPR002909 -
Trre8g03984 1080 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Trre8g03984 1080 SMART CG_1_2 18 136 IPR005559 GO:0003677
Trre8g03984 1080 SMART ANK_2a 763 792 IPR002110 GO:0005515
Trre8g03984 1080 SMART ANK_2a 724 753 IPR002110 GO:0005515
Trre8g03984 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 901 951 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03984 Trre-Chr8 44721331 44728619 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03984 1 1061 CAMTA Transcription Factor Family AT5G64220 51.769 0.0 1019
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Trre8g03984 CG-1 6.5e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03984 K21596 - gmx:100795682 1594.71