Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03982 ATGGCGGACCCTCCTTCTCGCCAATTGCCTACTCGACCAGATTTTCAGCAGTTACAATTTGAAGCCCAGCATCGGTGGTTACGCCCTGCAGAAATATTGGAAATTCTTCGTAATTATCAGATGTTTCAAATCACACCTGAACCGCCTAGCAGGCCACCAAGTGGATCACTTTTTCTTTTTGATCGGAAGGTTTTGAGATACTTCAGAAAGGATGGACACAACTGGAGAAAGAAGAGAGACGGAAAAACTGTGAGGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTATTGATGTGCTACACTGCTATTATGCCCATGGAGAAGAGAATGAAAATTTTCAGAGGCGAAGCTATTGGATGCTTGAACCGGATATGATGCATATAGTATTTGTCCACTACTTGGATGTTAAGGTTAACAAGACCAATATTGGTGCAAGCACAGATACTAAAGGGGTTACATCAGATTCCCAAAACGGCAGTTCTGTGTCATCTGGCTTTCCTGCAAATTATGGTAACATGCCATCGGGAAGTGCGGATTCCATGAGCCCAACAAGCACTTTAACTTCTTTGTGTGAAGATGCAGATTCAGAGGATATTCATCAAGCAAGCTCGGGATTTCACACTCTTCGTGAGTCACAAAATCTGGGGAATGGTCCACTTATGGATAAGGTTGATGCTCGTTCAAATAGTTCATATCTTACACATCCCTTTTCAGGACCAAATTACCTCCCACTTGTTCAGGGGGGTAAATCCAATCAAAGTGATGCTACATATGCCGAGGATCAGAGAGCACTTAACATAGCATCCTGGGACAATGTCATGGAAAAATCTGCAGGATTGCATACTGATCCCTCCTTTGTATCATCTAATTCTATTCCATCGAGTTCAATGGGTAACATCCTTGAACAAGAGCATTCTGTCTTTACTGAAGGAAGGGCCTCACAGTCTCTCCAATCAAATTGGCAGATTCCTTTTGAAGACAATACAGGAGAATTTCCTAAATGGAGCTTTACTCAATCATTGAATTTGGAATTTGAATCTGATTATTCAACTGAACTACTGGGAAAAGAAACTAATAATGCAAGTTCAGAAATTGGTCCTGACCTATTTTGTTTTAATTTTGAGCCAAAAGAACAGCCTGTGCAGCAAAACTTGTCAAAGGAGCATACACCTGCACAATCTCAGGATGCACTGAAATCTGAGCGTGGAATTCATGGTGAACACAGTGCCAATTATTCCCTGAACATGAAGCATGCTTTTATGGAGGCTGAAGAGAGCCTGAAGAAGGTCGATAGCTTCTCTAGGTGGATTTCTAAAGAACTTGCAGCGGTGGATGATCTGCACATGCAGTCTTCCCCTGGTATTTCATGGGGCACGGATGAATGTGGGAATGTGATAGATGATACCTCATTGAACCCGTCCCTATCTCAAGACCAGCTGTTTAGCATACATGATTTTTCCCCTAAATGGGCTTATGCTGGATCAGAAATTGAGGTGTTGATTATTGGAACATTTTTGAAGAGTAAACCAGAGGTGGCAACATGTAACTGGTCCTGTATGTTTGGGGAAGTGGAAGTTCCAGCTACGGTTTTAGCTAATGGAATTCTGTCCTGTCAAGCTCCACCGCATGAGATTGGACGGATCCCTTTCTATGTAACCTTTTCCAATAGATTTGCTTGTAGTGAAGTTCGGGAATTTGAGTTTAAAGAGGGCTTTACTAGGAATGTGGATGTGGCAGATTTTTTTAACAGCTCAACTGAAATGATGCTTCATTTGCAACTGGAAGAGTTACTTACTTTGAATTCAGTGCATCTTTCAGATCAAGTTTTTGAGGATGATGTGGAGAAAAGAAACTTGATTCTTAAGCTTATTTCACTGAAAGAGGAAGAGGAGTATTCGAGTAATGAAGAGCCAACTGGAGAGATGGATATATCAAAACACAGGTTGGAGGTGCATATATTTCACAGGCAGGTTAAGGAGAAGCTGTACTCGTGGCTTCTTCACAAAGTAACCGAAACTGGTAAAGGGCCTCATGTGTTTGATAAAAATGGGCAATGTGTATTACATTTAGTTGCTGCTCTTGGTTATGATTGGGCCATAGCACCAATTGTAACTTCTGGAGTTAATATCAACTTCCGTGATGTGAATGGATGTACGGCTCTACACTGGGCTGCATCCTGTGACAGGGAGCGAACGGTTGTTCTCCTTGTCTCCATGGGTGCCGCTGCTGGAGCATTGACTGATCCATGTCCAGAATTCCCTTCAGGAAGAACACCTGCAGATCTTGCTTCTAGCTATGGCCACAAAGGAATTTCGGGTTTTCTTGCCGAGTCATTATTAACTAGCCACCTTGAATCACTCACAGTGGATGATGTAAATAAAGATGGTGCAAAAGAAACTTTGGGAATGAAAGCAGTACAAACGATTTCAGAACGAGTTGCGACACCTGTGTTTAGTGGTGATTTACCAGATGCTATCTGCCTTAAGGACTCTCTCGATGCTGTCCGTAATGCTACACAAGCTGCTGATAGAATACATCAAGTATATAGAATGCAATCATTTCAAAGAAAACAGTTAGCTCAGTATGAAGGCGATGATGAGTTTGGATTGTCAGATCAGCAAGCTCTTTCGCTTCTAGCCTCTAAGGCATGCAAATCTGGTCATGGGGATAGTTCAGTCAATGCTGCTGCAATACAAATACAGAAAAAATTCCGTGGCTGGACAAAGAGAAAAGAATTCCTGTTCATTCGTCAGAGAGTTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAAGTAAGAAAGAAGTATAAATCATTCATCTGGTCCGTGGGAATCCTGGAGAAGGTTGTATTACGGTGGAGGCGTAAGGGCAGGGGTTTACGTGGATTTCGACCAGATGCTGTTAATAAGGCCCCCAACCAACCAAGCAACGATCCTGTGAAGGAGGATGACGATTATGATTTTCTCAAGGAAGGGAGGAAACAGAGTGAAGAAAGGTTCCAAAAGGCCCTTTCAAGGGTTAAGTCCATGGTTCAGTATCCAGAGGCCCGGGCCCAGTACAGGCGACTGCTAAATGTAGTAGACGATTTCCGTCAAACCAAGGCATCTAGTTTGAGTCCGATAAATTCGGAAGAGGCAGTCGATGGTGTGGAAGATTTGATTGATATCGACATGCTTTTAGATGATGATAATTTCTTACCTATAGTATTCGATTGA 3213 0.4255 MADPPSRQLPTRPDFQQLQFEAQHRWLRPAEILEILRNYQMFQITPEPPSRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLDVKVNKTNIGASTDTKGVTSDSQNGSSVSSGFPANYGNMPSGSADSMSPTSTLTSLCEDADSEDIHQASSGFHTLRESQNLGNGPLMDKVDARSNSSYLTHPFSGPNYLPLVQGGKSNQSDATYAEDQRALNIASWDNVMEKSAGLHTDPSFVSSNSIPSSSMGNILEQEHSVFTEGRASQSLQSNWQIPFEDNTGEFPKWSFTQSLNLEFESDYSTELLGKETNNASSEIGPDLFCFNFEPKEQPVQQNLSKEHTPAQSQDALKSERGIHGEHSANYSLNMKHAFMEAEESLKKVDSFSRWISKELAAVDDLHMQSSPGISWGTDECGNVIDDTSLNPSLSQDQLFSIHDFSPKWAYAGSEIEVLIIGTFLKSKPEVATCNWSCMFGEVEVPATVLANGILSCQAPPHEIGRIPFYVTFSNRFACSEVREFEFKEGFTRNVDVADFFNSSTEMMLHLQLEELLTLNSVHLSDQVFEDDVEKRNLILKLISLKEEEEYSSNEEPTGEMDISKHRLEVHIFHRQVKEKLYSWLLHKVTETGKGPHVFDKNGQCVLHLVAALGYDWAIAPIVTSGVNINFRDVNGCTALHWAASCDRERTVVLLVSMGAAAGALTDPCPEFPSGRTPADLASSYGHKGISGFLAESLLTSHLESLTVDDVNKDGAKETLGMKAVQTISERVATPVFSGDLPDAICLKDSLDAVRNATQAADRIHQVYRMQSFQRKQLAQYEGDDEFGLSDQQALSLLASKACKSGHGDSSVNAAAIQIQKKFRGWTKRKEFLFIRQRVVKIQAHVRGHQVRKKYKSFIWSVGILEKVVLRWRRKGRGLRGFRPDAVNKAPNQPSNDPVKEDDDYDFLKEGRKQSEERFQKALSRVKSMVQYPEARAQYRRLLNVVDDFRQTKASSLSPINSEEAVDGVEDLIDIDMLLDDDNFLPIVFD 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03982 1070 SMART iq_5 891 913 IPR000048 GO:0005515
Trre8g03982 1070 SMART iq_5 914 936 IPR000048 GO:0005515
Trre8g03982 1070 SUPERFAMILY Ankyrin repeat 670 776 IPR036770 -
Trre8g03982 1070 Pfam IQ calmodulin-binding motif 917 936 IPR000048 GO:0005515
Trre8g03982 1070 Pfam IQ calmodulin-binding motif 894 912 IPR000048 GO:0005515
Trre8g03982 1070 ProSiteProfiles Ankyrin repeat profile. 715 747 IPR002110 GO:0005515
Trre8g03982 1070 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Trre8g03982 1070 Gene3D - 891 938 - -
Trre8g03982 1070 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1032 - -
Trre8g03982 1070 Gene3D Immunoglobulins 475 570 IPR013783 -
Trre8g03982 1070 Pfam IPT/TIG domain 482 555 IPR002909 -
Trre8g03982 1070 ProSiteProfiles IQ motif profile. 893 921 IPR000048 GO:0005515
Trre8g03982 1070 SMART ANK_2a 754 783 IPR002110 GO:0005515
Trre8g03982 1070 SMART ANK_2a 715 744 IPR002110 GO:0005515
Trre8g03982 1070 MobiDBLite consensus disorder prediction 963 983 - -
Trre8g03982 1070 ProSiteProfiles IQ motif profile. 915 939 IPR000048 GO:0005515
Trre8g03982 1070 MobiDBLite consensus disorder prediction 379 399 - -
Trre8g03982 1070 FunFam Calmodulin-binding transcription activator 2 475 571 - -
Trre8g03982 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 892 942 IPR027417 -
Trre8g03982 1070 MobiDBLite consensus disorder prediction 146 188 - -
Trre8g03982 1070 SUPERFAMILY E set domains 482 567 IPR014756 -
Trre8g03982 1070 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Trre8g03982 1070 SMART CG_1_2 18 136 IPR005559 GO:0003677
Trre8g03982 1070 MobiDBLite consensus disorder prediction 379 396 - -
Trre8g03982 1070 FunFam Calmodulin-binding transcription activator 2 891 939 - -
Trre8g03982 1070 Gene3D - 650 782 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03982 Trre-Chr8 44721331 44728619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03982 1 1051 CAMTA Transcription Factor Family AT5G64220 51.453 0.0 1021
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Trre8g03982 CG-1 6.4e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03982 K21596 - gmx:100795682 1577.76