Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03978 ATGGATAGTCTATGCTGCTTCAGTAAGTCGGTGGGAGGGCGTTCTTCATGCAACTCTGGCAAAGGCAAGGGCAATCAATCGCCAGTTAAATATGGCTTTAGCCTTGTTAAAGGGAAAGCCAACCATCCAATGGAGGATTATCATGTAGCAAAGTTTGTCCATTTCAAAGGCCACGAGCTAGGACTATTTGCTATATACGATGGACACCTGGGAGACAGTGTACCATCATATTTGCAAAAGAATCTCTTTTCTAATATCTTGAAGGAAGACGACTTCTGGGAAGATCCGTTCATGTCAATTTCAAAAGCTTACGAGTCAACAGATCAGGCAATTCTTACTCACAGTCCTGATTTGGGGCGAGGAGGATCAACTGCCGTAACTGCAATTCTCATAAATAATCAGAAACTATGGGTCGCCAATGTTGGAGATTCACGAGCAGTTCTGTCAAGAGGAGGGGTAGCTGTACAGATGTCTACTGATCATGAACCTAATACGGAACGAGGAAGCATTGAAAATAGAGGTGGCTTTGTCTCAAACATGCCAGGAGATGTGGCAAGAGTGAATGGCCAGCTTGCGGTTTCTCGAGCATTTGGAGACAAAAACCTCAAAACACATTTGCGATCTGACCCTGACATTCAGTACGCCGATGTTAACCAAGATACCGAGTTTTTGATACTTGCTAGTGATGGTCTATGGAAGGTAATGGCGAATCAAGAAGCTGTTGATATCGCAAAAAAGATAAAGGATCCACAAAAGGCAGCTAAACAACTAGCTACCGAGGCACTGAACAGAGACAGTAAAGATGATATTTCGTGTGTTGTAGTTCGTTTCAAGGGTTGA 840 0.4345 MDSLCCFSKSVGGRSSCNSGKGKGNQSPVKYGFSLVKGKANHPMEDYHVAKFVHFKGHELGLFAIYDGHLGDSVPSYLQKNLFSNILKEDDFWEDPFMSISKAYESTDQAILTHSPDLGRGGSTAVTAILINNQKLWVANVGDSRAVLSRGGVAVQMSTDHEPNTERGSIENRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRSDPDIQYADVNQDTEFLILASDGLWKVMANQEAVDIAKKIKDPQKAAKQLATEALNRDSKDDISCVVVRFKG 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03978 279 ProSiteProfiles PPM-type phosphatase domain profile. 30 277 IPR001932 -
Trre8g03978 279 SUPERFAMILY PP2C-like 27 278 IPR036457 -
Trre8g03978 279 SMART PP2C_4 26 275 IPR001932 -
Trre8g03978 279 PANTHER PROTEIN PHOSPHATASE 25 277 IPR015655 GO:0004722|GO:0006470
Trre8g03978 279 CDD PP2Cc 29 277 IPR001932 -
Trre8g03978 279 Gene3D - 14 279 IPR036457 -
Trre8g03978 279 FunFam Probable protein phosphatase 2C 39 21 278 - -
Trre8g03978 279 Pfam Protein phosphatase 2C 39 270 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03978 Trre-Chr8 44662477 44664814 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03978 1 278 PP2C-type Phosphatase Gene Family AT1G22280 71.777 1.07e-148 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03978 K17506 - gmx:100801722 508.449