Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03972 ATGTTGTTAGGGTTTCAGGATTTGGGAGTTAGGTTTATGGCATCGCATGAAATCAATCAATCTACTATTGTGCAGGGACATTTAAATGCTCAGCCCACTCAAGAATGTGTAACAAAGACGTTAAAAAGATTGGAAGAGAAGATGCAAGGGCGAGTACTGAAACACATGCTATATCTTATGCGCACTGGGGAAAAGGGTGTTCGAATACGTGTAGTTCTTGCTCTTGCACATTTATGTTCCCCTGATGATCGTAAAACTATTTTCATTGACAATAATGGATTAGAATTGCTGTTGGAGCTTCTTCAATCCACAAACCAAAAGCAGAAAGGTGAAGCTTCAGCAGCGCTTCACGCAATGGCTGCCAAAGGAATGCGTGCCTCTATTCGTAATCCTGCTCCTACATCACCAACTCCCCATGTTTACTTGGGTGAGGAATATGTAAACAATCCTAAACTTTCTGATGTCACATTCATAGTTGAAGGAAAAAGATTTCATGCTCATAGGTCTTGTTTACTTTCTTCTGATATATTTCGTGCAATGTTTGATGGAGGTTTTTGGGAAAAGGAAGCCAAAAATATAGAGATTCCAAATAACTCTCCAGAGTCTTTCTACAATGAGTGA 621 0.3961 MLLGFQDLGVRFMASHEINQSTIVQGHLNAQPTQECVTKTLKRLEEKMQGRVLKHMLYLMRTGEKGVRIRVVLALAHLCSPDDRKTIFIDNNGLELLLELLQSTNQKQKGEASAALHAMAAKGMRASIRNPAPTSPTPHVYLGEEYVNNPKLSDVTFIVEGKRFHAHRSCLLSSDIFRAMFDGGFWEKEAKNIEIPNNSPESFYNE 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03972 206 ProSiteProfiles BTB domain profile. 153 206 IPR000210 GO:0005515
Trre8g03972 206 SUPERFAMILY POZ domain 144 204 IPR011333 -
Trre8g03972 206 SUPERFAMILY ARM repeat 49 122 IPR016024 -
Trre8g03972 206 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 23 201 IPR044282 -
Trre8g03972 206 Gene3D - 27 132 IPR011989 -
Trre8g03972 206 Gene3D Potassium Channel Kv1.1; Chain A 139 205 IPR011333 -
Trre8g03972 206 Pfam BTB/POZ domain 145 204 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03972 Trre-Chr8 44611784 44614492 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre8g03972 BTB 5.4e-10 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03972 - - aew:130750903 232.261