Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03971 ATGTTGTTAGGGTTTCAGGATTTGGGAGTTAGGTTTATGGCATCGCATGAAATCAATCAATCTACTATTGTGGACAATGTTGTAGTTATTATTAACGCCGGTGGTTTTCAAAAACTGCAGCAGGGACATTTAAATGCTCAGCCCACTCAAGAATGTGTAACAAAGACGTTAAAAAGATTGGAAGAGAAGATGCAAGGGCGAGTACTGAAACACATGCTATATCTTATGCGCACTGGGGAAAAGGGTGTTCGAATACGTGTAGTTCTTGCTCTTGCACATTTATGTTCCCCTGATGATCGTAAAACTATTTTCATTGACAATAATGGATTAGAATTGCTGTTGGAGCTTCTTCAATCCACAAACCAAAAGCAGAAAGGTGAAGCTTCAGCAGCGCTTCACGCAATGGCTGCCAAAGGAATGCGTGCCTCTATTCGTAATCCTGCTCCTACATCACCAACTCCCCATGTTTACTTGGGTGAGGAATATGTAAACAATCCTAAACTTTCTGATGTCACATTCATAGTTGAAGGAAAAAGATTTCATGCTCATAGGTCTTGTTTACTTTCTTCTGATATATTTCGTGCAATGTTTGATGGAGGTTTTTGGGAAAAGGAAGCCAAAAATATAGAGATTCCAAATAACTCTCCAGAGTCTTTCTACAATGAGTGA 669 0.3946 MLLGFQDLGVRFMASHEINQSTIVDNVVVIINAGGFQKLQQGHLNAQPTQECVTKTLKRLEEKMQGRVLKHMLYLMRTGEKGVRIRVVLALAHLCSPDDRKTIFIDNNGLELLLELLQSTNQKQKGEASAALHAMAAKGMRASIRNPAPTSPTPHVYLGEEYVNNPKLSDVTFIVEGKRFHAHRSCLLSSDIFRAMFDGGFWEKEAKNIEIPNNSPESFYNE 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03971 222 Pfam BTB/POZ domain 161 220 IPR000210 GO:0005515
Trre8g03971 222 Gene3D - 12 158 IPR011989 -
Trre8g03971 222 Gene3D Potassium Channel Kv1.1; Chain A 159 221 IPR011333 -
Trre8g03971 222 SUPERFAMILY ARM repeat 25 139 IPR016024 -
Trre8g03971 222 SUPERFAMILY POZ domain 160 220 IPR011333 -
Trre8g03971 222 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 25 217 IPR044282 -
Trre8g03971 222 ProSiteProfiles BTB domain profile. 169 222 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03971 Trre-Chr8 44611784 44614492 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre8g03971 BTB 6.2e-10 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03971 - - aew:130750903 251.906