Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03966 ATGACTTCCCTTATTTCAGCTGTCCCTAATATTCTAGAGATTGAACCAACTAGAGATATTGCTCCAAAAAGGATGAGTAATGGAGGAGAAGAGAAGGGAATTTGTTTGACATGGAAGGATCTATGGGTGACTGTTGATTCTTCTTCTTCCAAAGGAAAGATGAAAGAAAGCAAATCAATTCTTGATGGTCTAACTGGTTATGCAAAACCAGGTCAGCTTTTGGCTATAATGGGTCCTTCTGGTTGTGGAAAATCTACACTTCTTGATGCTTTAGCAGGGAGATTAGCTTCTAACACAAGACAATCAGGGGAGATTCTGATCAATGGCAACAAACAAGCATTGGCTTACGGAACCTCGGCATATGTGACACAAGATGATACATTATTAACAACTTTAACCGTTAGAGAAGCAGTGTACTATTCAGCTCAACTTCAATTACCAGACACAATGTCTAAGGAAGAGAAGAAAGAAAGAGCTGATTTTACAATAAAAGAAATGGGTCTACATGATGCAATTAACACAAGAATTGGAGGGTGGGGTGTAAAAGGAATAAGTGGGGGTCAAAAAAGAAGAGTGAGCATTAGCATTGAAATTCTAACACGTCCAAGACTTCTCTTTCTTGATGAACCAACTAGTGGACTTGATAGTGCTGCTTCTTACTATGTCATGAAAAGAATAGCTTCTTTGGATAAAAAAGATGGAATTCAAAGAACTATTATTGCTTCAATCCATCAACCTAGTACTGAAGTTTTTCAACTTTTTCATAATCTTTGTCTTTTGTCTTCTGGTAAAACTGTTTACTTTGGACCTGCTTCTGCTGCTTCTGAGTTTTTTGCTTCAAATGGTTTTCCTTGTCCTACTCTCCAAAATCCATCTGATCATTTACTTAAAACTATAAACAAGGATTTTGATCAGGATATTGAGATGGATTTAGAAGAGATCAACGGAACAATTTCTATAGAACAAGCAATTGGAATCCTTGTGAGCTCATATAAATCATCTGAAAGAAACCAAGAAGTTAAAAATGAAGTAGCAATGCTATCTAATAAGGATAACAATTCAACATACAAGAAGAAAAAACATGCTGGCTTCATTAATCAATGCTTAGTTCTTACAAGAAGATCTTTTGTGAACATGTTTCGTGATCTTGGCTATTATTGGTTACGCCTTGGCATATATATTGCATTGTGTATAAGTTCAGCCACTATCTTTAATGGCTTGGATAAAAGTTATGGCTCAATTCAGGATAGAAGTTCATTTCTTATGTTTGTGTTTTCATTCCTTACTTTCATGACCATTGGTGGATTCCCTTCTTATGTGGAGGATATGAAGGTATTTGAACGTGAAAGACTAAATGGACATTATGGTGTGACTGCATATGTGATTGGGAACACATTTTCATCTCTTCCATATTTATTAATGGTTTCACTAATTCCTGGAGCTATAGCATATTTCCCTCCTGGTCTTCAAAATGGATATGATCACTTTCTATATTTTATTGGTGCTCTATTTTCTTGTCTAATGTTAGTAGAGAGTCTTATGATGATAGTTGCAAGCATTGTTCCTGATTTTCTAATGGGAATTATAACTGGTGCTGGAATTCAAGGAATGATGATGTTGGCTGGTGGATTCTTTAGATTGCCAAATGATCTTCCAAAGCCATTTTGGAGATATCCTATGTACTATATTTCATTCCATAGATATGCTTTTCAAGGATCTTATAAAAATGAATTTGAAGGACTTAAATTCAATAGAGATGATGGAATTGGTGGTTACATTAGTGGTGAAGAGATTTTGAGAAATCAATTTCATGTAGATATGAGTTACTCAAAGTGGGTTGATCTTGGAATATTGTTTGGTATGATTGTTTTGTATAGAGTTTTGTTTTTGATTATTATCAAAACTACTGAGAAGCTAAAACCTATTGTTGTATCATATATGTCAATGTCTCCTAGGAAAACATTACAAGTCTTGGAGAATCCTAGTGCCACTCCTTTACATGGAGAAATTGTATAA 2016 0.3492 MTSLISAVPNILEIEPTRDIAPKRMSNGGEEKGICLTWKDLWVTVDSSSSKGKMKESKSILDGLTGYAKPGQLLAIMGPSGCGKSTLLDALAGRLASNTRQSGEILINGNKQALAYGTSAYVTQDDTLLTTLTVREAVYYSAQLQLPDTMSKEEKKERADFTIKEMGLHDAINTRIGGWGVKGISGGQKRRVSISIEILTRPRLLFLDEPTSGLDSAASYYVMKRIASLDKKDGIQRTIIASIHQPSTEVFQLFHNLCLLSSGKTVYFGPASAASEFFASNGFPCPTLQNPSDHLLKTINKDFDQDIEMDLEEINGTISIEQAIGILVSSYKSSERNQEVKNEVAMLSNKDNNSTYKKKKHAGFINQCLVLTRRSFVNMFRDLGYYWLRLGIYIALCISSATIFNGLDKSYGSIQDRSSFLMFVFSFLTFMTIGGFPSYVEDMKVFERERLNGHYGVTAYVIGNTFSSLPYLLMVSLIPGAIAYFPPGLQNGYDHFLYFIGALFSCLMLVESLMMIVASIVPDFLMGIITGAGIQGMMMLAGGFFRLPNDLPKPFWRYPMYYISFHRYAFQGSYKNEFEGLKFNRDDGIGGYISGEEILRNQFHVDMSYSKWVDLGILFGMIVLYRVLFLIIIKTTEKLKPIVVSYMSMSPRKTLQVLENPSATPLHGEIV 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03966 671 Gene3D - 40 325 IPR027417 -
Trre8g03966 671 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 36 287 IPR003439 GO:0005524
Trre8g03966 671 Pfam ABC transporter 62 212 IPR003439 GO:0005524
Trre8g03966 671 SMART AAA_5 70 259 IPR003593 GO:0016887
Trre8g03966 671 FunFam ABC transporter G family member 11 34 330 - -
Trre8g03966 671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 276 IPR027417 -
Trre8g03966 671 Pfam ABC-2 type transporter 367 578 IPR013525 GO:0016020|GO:0140359
Trre8g03966 671 CDD ABCG_EPDR 33 269 - -
Trre8g03966 671 Pfam ABC-2 type transporter 244 333 IPR043926 GO:0140359
Trre8g03966 671 ProSitePatterns ABC transporters family signature. 184 198 IPR017871 GO:0005524|GO:0016887
Trre8g03966 671 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 29 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03966 Trre-Chr8 44563252 44567797 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03966 60 272 Calmodulin-binding Proteins AT2G36910 29.680 1.46e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03966 K05681 - gmx:100813462 981.474