Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03964 ATGGCTTCTTCCCTATCTATCCCATCTGGCTTTGAAATTGAAACAAGTAGTTTAGAAAAATCACTCAAACGAAGTGCACTAGACATTGAGACCACAACCACATTAGATGAAGTTGATGGTATATGCTTAACATGGAAGGATATATGGGTAAATACAATTTCATCAAATGGAAAGAATGGAAGCAAATCAATTCTTCAAGGTTTAACTGGTTATGCTAAGCCTGGCCAACTCTTGGCCATAATGGGTCCTTCTGGCTGTGGCAAGTCCACGTTACTCGATACCTTAGCCGGGAGATTGAGCTCAAACACAAGACAAACAGGGGAAATTTTGATCAATGGTCACAAACAAGAACTGTCTTATGGAACTTCGGCTTATGTGACACAAGATGATACATTATTAACAACTTTAACCGTTAGAGAGGCAGTGTACTATTCAGCTCAACTTCAATTACCTAACACAATGTCTAAAGAAGAGAAGAAAGAGAGAGCTGATTTTACAATAAAAGAAATGGGTCTACAAGATGCAATTAACACAAGAATTGGAGGGTGGGGTGTAAAAGGAATAAGTGGAGGTCAAAAAAGAAGAGTCAGCATTAGCATTGAGATTCTAACACGTCCAAGGCTTCTATTTCTTGATGAACCAACTAGTGGACTTGATAGTGCTGCTTCTTACTATGTTATGAAAAGAATTGCTACTTTGGATCATAAAGATGGAATTCAAAGGACTATTATAACTTCAATCCATCAACCAAGTACTGAAGTTTTTCAACTTTTTCATAATCTTTGTCTTCTGTCTTCTGGTAGAACTGTTTACTTTGGACCTGCCTCTGCTGCATGTGAGTTTTTTGCTTTGAATGGATTTCCTTGTCCTCCTCTCCAAAATCCATCTGATCATTTACTTAAAACTATAAACAAGGATTTTGATCAGGATATTGAGGCAGAGACCGGAATAATAACCGCAGAAGAAGCAATTTGTATCCTTGTGAGTTCATATAAATCATCTGAAAGAAATCAAGATGTTCATGATGAAGTAGCAGTATTATCTAAAAAGAACACTAGCTCAATGGATCATAAGAAGAAAGGGCATGCAGGGTTCCTTACTCAATGCTTAGTTCTTACCAAAAGGTCATCAGTGAACATGTTTCGTGATCTAGGCTATTATTGGCTGCGCTTAGGAATATATGTTGCATTGGCTATAAGTTTAGGCACTATTTTCTATGATTTGGGTACAAGTAATGGCTCAATTAAGGATCGAGGTTCACTTCTTTCATTCATCTCTGGATTCTTAACTTTCATGAGTATTGGTGGATTCCCTTCCTTTGTGGAAGACATGAAGGTATTTCAAAGAGAAAGACAAAATGGGCATTATGGTGTGATTGCATATGTGATTGGGAACACTTTTTCATCAATTCCATTCGTTTTATTGGTTACAATAATTCCTGCAGTTATAACCTATTACCTCTCTGGTCTTCAGAAAGGATATGAACACTTTTTATACTTTGCTAGTGTTCTATTTTCTAGTCTAATGTTAGTGGAAAGTTTAATGATGATAGTTGCAAGCATTGTCCCTAACTATCTAATGGGAATCATAACTGGTGCTGGAATTCAAGGAATCGTGATTTTGATTGGTGGATTCTTCAAATTGCCACATGATCTTCCTAAGATATTTTGGAGATATCCATTACACTATGTTGCATTTCATACATATGTGTTTGAAGGATTATTCAAGAATGAGTATGAAGGACTAAAATTTCCTATAAAAAATGAACAAGGCACAAATAGTTACATTACCGGTGAAGTGATTTTGAGAGATATTTGGCAAAGTAACATGAGTTACTCAAAATGGATTGATCTTGCAATTTTGCTAGGAATGATTGTTTTGTATCGTGTTTTGTTCCTTATCATTATCAAGATTACAGAGAAAGTGAAACCTATTATTGGATCATTATTATCTTGCACGTTTGTGTCTCCCAAAACAACAATACATGTCGTGGAGAACCCTAATGCCACTCCTTTGTATCAAGAGGTCATATAG 2034 0.3614 MASSLSIPSGFEIETSSLEKSLKRSALDIETTTTLDEVDGICLTWKDIWVNTISSNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAGRLSSNTRQTGEILINGHKQELSYGTSAYVTQDDTLLTTLTVREAVYYSAQLQLPNTMSKEEKKERADFTIKEMGLQDAINTRIGGWGVKGISGGQKRRVSISIEILTRPRLLFLDEPTSGLDSAASYYVMKRIATLDHKDGIQRTIITSIHQPSTEVFQLFHNLCLLSSGRTVYFGPASAACEFFALNGFPCPPLQNPSDHLLKTINKDFDQDIEAETGIITAEEAICILVSSYKSSERNQDVHDEVAVLSKKNTSSMDHKKKGHAGFLTQCLVLTKRSSVNMFRDLGYYWLRLGIYVALAISLGTIFYDLGTSNGSIKDRGSLLSFISGFLTFMSIGGFPSFVEDMKVFQRERQNGHYGVIAYVIGNTFSSIPFVLLVTIIPAVITYYLSGLQKGYEHFLYFASVLFSSLMLVESLMMIVASIVPNYLMGIITGAGIQGIVILIGGFFKLPHDLPKIFWRYPLHYVAFHTYVFEGLFKNEYEGLKFPIKNEQGTNSYITGEVILRDIWQSNMSYSKWIDLAILLGMIVLYRVLFLIIIKITEKVKPIIGSLLSCTFVSPKTTIHVVENPNATPLYQEVI 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03964 677 Pfam ABC-2 type transporter 248 303 IPR043926 GO:0140359
Trre8g03964 677 ProSitePatterns ABC transporters family signature. 188 202 IPR017871 GO:0005524|GO:0016887
Trre8g03964 677 Gene3D - 46 282 IPR027417 -
Trre8g03964 677 SMART AAA_5 74 263 IPR003593 GO:0016887
Trre8g03964 677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 283 IPR027417 -
Trre8g03964 677 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 291 IPR003439 GO:0005524
Trre8g03964 677 Pfam ABC transporter 66 216 IPR003439 GO:0005524
Trre8g03964 677 FunFam ABC transporter G family member 11 41 330 - -
Trre8g03964 677 Pfam ABC-2 type transporter 367 579 IPR013525 GO:0016020|GO:0140359
Trre8g03964 677 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 36 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03964 Trre-Chr8 44521276 44528491 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03964 64 276 Calmodulin-binding Proteins AT2G36910 28.767 5.85e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03964 K05681 - gmx:100794527 973.77