Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03959 ATGAGTTCTTTTCTTCAACTTCATGCTATTGATTATGAGCAAGACAATGTGGAATTTGAGGTGGAAGCCACCAAATCATCAGTAGAAAATGATAAGGTGGAAGGAATTTTCTTGACATGGGAAGATCTTTGGGTGACTGTTTCAAATGGAAATAATGGAAGGAAACCAATACTTGAAGGTCTAAAAGGATATGCAAAACCAGGACAACTTTTAGCTATAATGGGTCCTTCTGGTTGTGGCAAGTCCACTCTTCTTGACGCTTTAGCAGGAAGATTAGGCTCTAAGACAAAACAAACAGGGAAGATCCTAATCAATGGCCACAAACAAGCACTGGCTTATGGAACATCTGCATATGTAACAGAAGATGATACAATTTTGAATACTCTAACAGTTAGAGAAGCTGTATACTACTCAGCTCAACTTCAATTACCAGATTCAATGTCAAAATCAGAGAAACAAGAGAGAGCAGATTTCATAATCAAAGAAATGGGGCTACAAGATTCAATCAACACAAGAATTGGAGGATGGAAATCCAAAGGCATTAGTGGTGGACAAAAGAGAAGAGTTAGCATTTGCATTGAGATTTTAACACATCCTCGACTTCTTTTCCTTGATGAACCAACAAGTGGACTTGATAGCGCAGCTTCTTATCATGTTATGAGTAGAATTTCAGGTTTAAATAAAAAGGATGGTATTCAAATGACTATTATTGCATCTATTCATCAGCCAAGTAACGAAATTTTTCGACTTTTTCATAACCTTTGTCTTCTGTCTTCTGGGAAAACAGTTTACTTTGGACCTGTCTCTGCTGCAATTAAGTTTTTCTCATCAAATGGTTTTCCATGCCCAAGTCTCCAGAGTCCTTCTGATCACTTTGTAAGAACAATTAACAAGGATTTTGAACAGGACCCTGAGAAAGGACTATATGGAGGGCTAAGCACAGAGGAAGCAATTCATATTCTTGTTAAATCATATGATTCATCCGAAATTAATCACCAAGTTCAAAAAGAACTTTCTCAAATTAAAAAAAGGGTCTTGGATACAGTGGAGAAGACAAGCCATGCTGATTTTTTAACACAGTGTCTGATTCTTACAAGAAGATCTTTTGTGAATATGTATCGCGAAGCAGGCTATTATTGGTTACGCCTACTTATCTATGGTGCATTGGCTTTAAGTCTTGGTACCATGTTCTTTCACATTGGTTCAAGCAGTGAATCAATTCAGGCTAGAGGTTCACTGCTTGTATTTGTTGTTACATTCTTGACATTCATAACTGTTTGTGGATTCCCTTCTTTTGTGGAGGATATGAAGGTATTTGAAAGAGAAAGACTTAATGGACATTATGGTGTAACTGCATTTACCATTGGCAACACATTATCTGCAATTCCATTCTTGCTATTGATGTCATTGATCCCAGGAACAATGGTTTATTACCTAGTTGGACTTCACCAAGGACATGAACAATTTGTGTACTTCATATCTATGCTTTTCATTTCAGTCTTTTTAGTTGAAGGTCTCATGATGATTGTTGCAAGTATGGTTCCAAATTTCCTAATGGGAATAATCTTTGGAACTGGAATCTTGGGAATAATGATGTTAGATGGTGGATTCTATAGATTACCAAGTGATATACCAAAGCCATTTTGGAAATACCCTTTGCATTATATTTCACTTCACAAATATGCATATCAAGGATTGTTTAAGAATGAGTTTCAAGGTCTAACATTCACTACTAGCAATGAAGTTATAGTTAGTGGTGAAGATATATTGAAAAACTTGTGGCAAATGGAAATGAATTACTCAAAGTGGGTGGATTTTACTATTTTGGTTGGAATGGCTTTAGTTTATAGAATTATGTTTTTGATTATCATCAAGAGCTTTGAGAAGGTGAAGCCTATTGTTGCAGCTATTAATTGTCCTCAAGAAATTTTTAGGTTCACTAAAGTGACTAGGAGCAGTGAGATTGATTAG 1971 0.3597 MSSFLQLHAIDYEQDNVEFEVEATKSSVENDKVEGIFLTWEDLWVTVSNGNNGRKPILEGLKGYAKPGQLLAIMGPSGCGKSTLLDALAGRLGSKTKQTGKILINGHKQALAYGTSAYVTEDDTILNTLTVREAVYYSAQLQLPDSMSKSEKQERADFIIKEMGLQDSINTRIGGWKSKGISGGQKRRVSICIEILTHPRLLFLDEPTSGLDSAASYHVMSRISGLNKKDGIQMTIIASIHQPSNEIFRLFHNLCLLSSGKTVYFGPVSAAIKFFSSNGFPCPSLQSPSDHFVRTINKDFEQDPEKGLYGGLSTEEAIHILVKSYDSSEINHQVQKELSQIKKRVLDTVEKTSHADFLTQCLILTRRSFVNMYREAGYYWLRLLIYGALALSLGTMFFHIGSSSESIQARGSLLVFVVTFLTFITVCGFPSFVEDMKVFERERLNGHYGVTAFTIGNTLSAIPFLLLMSLIPGTMVYYLVGLHQGHEQFVYFISMLFISVFLVEGLMMIVASMVPNFLMGIIFGTGILGIMMLDGGFYRLPSDIPKPFWKYPLHYISLHKYAYQGLFKNEFQGLTFTTSNEVIVSGEDILKNLWQMEMNYSKWVDFTILVGMALVYRIMFLIIIKSFEKVKPIVAAINCPQEIFRFTKVTRSSEID 656
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03959 656 ProSitePatterns ABC transporters family signature. 181 195 IPR017871 GO:0005524|GO:0016887
Trre8g03959 656 Gene3D - 38 306 IPR027417 -
Trre8g03959 656 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 29 637 - -
Trre8g03959 656 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 38 284 IPR003439 GO:0005524
Trre8g03959 656 Pfam ABC transporter 61 209 IPR003439 GO:0005524
Trre8g03959 656 FunFam ABC transporter G family member 11 36 324 - -
Trre8g03959 656 CDD ABCG_EPDR 35 266 - -
Trre8g03959 656 SMART AAA_5 67 260 IPR003593 GO:0016887
Trre8g03959 656 Pfam ABC-2 type transporter 241 296 IPR043926 GO:0140359
Trre8g03959 656 Pfam ABC-2 type transporter 359 571 IPR013525 GO:0016020|GO:0140359
Trre8g03959 656 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 276 IPR027417 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre8g03959 Trre-Chr8 44450641 44461061 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03959 57 273 Calmodulin-binding Proteins AT2G36910 25.676 6.75e-09 57.4
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03959 K05681 - gmx:100789571 1088.94