Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03958 ATGGGTGGTCATGAGGGAGAAAAGGGTGGCATTACTGTGACATGGGAGAATTTGGAGGCAATTGTTACAAATGGAAAGAATAGAAAACTAATTCTTCAAGGACTTACAGGTTATGCCCAGCCAGGGAAGCTTTTGGCTGTAATGGGTCCTTCAGGCTGTGGCAAATCCACACTCCTTGATGCTTTAGCAGGAAGATTGAGATCAAACATACAACAATCAGGGAAGATTCTAATCAATGGCAAAAAACAAACACTGGCTTATGGAACATCGGGTTATGTAACACAAGATGATGCTATGCCGTCAACTTTAACAGCTGGTGAAACTTTATACTACTCCGCTCAACTTCAATTTCCAAACTCAATGTCCATAGCTGAGAAGAAGAAACAAGCAGATATCACTCTCAGAGAAATGGGCCTGCAAGATGCTATCAACACAAGGGTTGGAGGGTATGGTTCTAAGGGCCTAAGTGGGGGGCAAAAGAGAAGACTTAGCATTTGCATTGAGATCCTAACACACCCCAGACTCCTTTTCCTTGACGAACCTACCAGCGGACTTGATAGTGCAGCTTCCTACTATGTTATGAGTAGAATTGCAAGTTTGAGTCTAAGGGATGGTATTCAAAGGACAATAGTAGCATCGATTCATCAGCCTAGTAGTGAAGTTTTTAAGCTTTTCCATGACCTCTGTCTTCTTTCGTCTGGGGAGACAGTATATTTTGGTCCAGCATCTGAAGCAAATCAGTTTTATGCTTCAAATGGTTTTCCTTGCCCAACTCTCTATAATCCTTCCGATCACTACTTAAGGATCATAAACAAAGATTTTGAACAGGACACTGAAGAAGGATTTGGTAAAGGAGTAATTACGGAAGAAGCAATTGGTATCCTTGTAAATTCTTATAAGGCGTCTGAAATTAAAAGTCAAGTTCAGCTCGAAGTGACAAAAATAAGTGAAAGCGTTAGAGGATCGCTACTTTCGTTTTTTATATCACTCGTGTCTTTCATGACACTTGTAGGAGGATTCTCTCCCTTGATTGAGGAAATGAAGGTCTTTGAACGAGAGAGATTGAATGGGCACTATGGTATTGCTGCTTTTCTCATTGGCAACATATTATCTGCTATTCCTTACATGCTAATGATCTCTCTCACTTCCGGAGTAATAATTTGTTACCTTTCTGGACTACACAAAGGACTAGAGCACTATTTATACTTTGCTTCTATCCTATTTGCCATTATGATGTGGGTTGAGAGCCTTATGATGGTTGTGGGGAGTATCTTCCCGAATTTTGTGATGGGTGTGATCATTGCTGGTGGAGTCGAAGGACTTGCGATTTTAACAGGTGGATTCTATCGACTTCCTAATGATCTTCCAAAGCCATTATGGAAGTACCCGTGCTACTACATTTCATTTCTCACATATGCTTTACAAGGATCATTCAAGAATGAATTTGAAGGCTTAACATTTGCTGGGTATCATGATGGAACCATTAGTGGTAGAGATTTACTAACTAAGACATGGCATGTGCAAATGGGTCACTCTAAGTGGGTTGATCTTGCTATCATGTTTGGAATGATCATTGTTTATCGAGTTCTATTCTTGGTCATTAGTAAGGTCAAGGAGAAGTCAAAACCCACTATTCCTACCATAAATGGACCCAGAGCAAAAACTTTCTCTAGAACCAATATGGATGAACCCTAA 1695 0.4035 MGGHEGEKGGITVTWENLEAIVTNGKNRKLILQGLTGYAQPGKLLAVMGPSGCGKSTLLDALAGRLRSNIQQSGKILINGKKQTLAYGTSGYVTQDDAMPSTLTAGETLYYSAQLQFPNSMSIAEKKKQADITLREMGLQDAINTRVGGYGSKGLSGGQKRRLSICIEILTHPRLLFLDEPTSGLDSAASYYVMSRIASLSLRDGIQRTIVASIHQPSSEVFKLFHDLCLLSSGETVYFGPASEANQFYASNGFPCPTLYNPSDHYLRIINKDFEQDTEEGFGKGVITEEAIGILVNSYKASEIKSQVQLEVTKISESVRGSLLSFFISLVSFMTLVGGFSPLIEEMKVFERERLNGHYGIAAFLIGNILSAIPYMLMISLTSGVIICYLSGLHKGLEHYLYFASILFAIMMWVESLMMVVGSIFPNFVMGVIIAGGVEGLAILTGGFYRLPNDLPKPLWKYPCYYISFLTYALQGSFKNEFEGLTFAGYHDGTISGRDLLTKTWHVQMGHSKWVDLAIMFGMIIVYRVLFLVISKVKEKSKPTIPTINGPRAKTFSRTNMDEP 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03958 564 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 11 317 - -
Trre8g03958 564 FunFam ABC transporter G family member 11 11 298 - -
Trre8g03958 564 SMART AAA_5 41 234 IPR003593 GO:0016887
Trre8g03958 564 Pfam ABC-2 type transporter 215 282 IPR043926 GO:0140359
Trre8g03958 564 Pfam ABC-2 type transporter 321 482 IPR013525 GO:0016020|GO:0140359
Trre8g03958 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 249 IPR027417 -
Trre8g03958 564 Gene3D - 12 258 IPR027417 -
Trre8g03958 564 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 13 258 IPR003439 GO:0005524
Trre8g03958 564 MobiDBLite consensus disorder prediction 545 564 - -
Trre8g03958 564 ProSitePatterns ABC transporters family signature. 155 169 IPR017871 GO:0005524|GO:0016887
Trre8g03958 564 Pfam ABC transporter 33 183 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03958 Trre-Chr8 44427217 44431797 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03958 42 193 Calmodulin-binding Proteins AT2G36910 33.962 9.00e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03958 K05681 - gmx:100784793 684.1