Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03957 ATGGGTGGTCATGAGGGAGAAAAGGGTGGCATTACTGTGACATGGGAGAATTTGGAGGCAATTGTTACAAATGGAAAGAATAGAAAACTAATTCTTCAAGGACTTACAGGTTATGCCCAGCCAGGGAAGCTTTTGGCTGTAATGGGTCCTTCAGGCTGTGGCAAATCCACACTCCTTGATGCTTTAGCAGGAAGATTGAGATCAAACATACAACAATCAGGGAAGATTCTAATCAATGGCAAAAAACAAACACTGGCTTATGGAACATCGGGTTATGTAACACAAGATGATGCTATGCCGTCAACTTTAACAGCTGGTGAAACTTTATACTACTCCGCTCAACTTCAATTTCCAAACTCAATGTCCATAGCTGAGAAGAAGAAACAAGCAGATATCACTCTCAGAGAAATGGGCCTGCAAGATGCTATCAACACAAGGGTTGGAGGGTATGGTTCTAAGGGCCTAAGTGGGGGGCAAAAGAGAAGACTTAGCATTTGCATTGAGATCCTAACACACCCCAGACTCCTTTTCCTTGACGAACCTACCAGCGGACTTGATAGTGCAGCTTCCTACTATGTTATGAGTAGAATTGCAAGTTTGAGTCTAAGGGATGGTATTCAAAGGACAATAGTAGCATCGATTCATCAGCCTAGTAGTGAAGTTTTTAAGCTTTTCCATGACCTCTGTCTTCTTTCGTCTGGGGAGACAGTATATTTTGGTCCAGCATCTGAAGCAAATCAGTTTTATGCTTCAAATGGTTTTCCTTGCCCAACTCTCTATAATCCTTCCGATCACTACTTAAGGATCATAAACAAAGATTTTGAACAGGACACTGAAGAAGGATTTGGTAAAGGAGTAATTACGGAAGAAGCAATTGGTATCCTTGTAAATTCTTATAAGGCGTCTGAAATTAAAAGTCAAGTTCAGCTCGAAGTGACAAAAATAAGTGAAAGCGATTTGGGTGCATTAAGGAATAGGAGGAGGATCCACGCTCCATTTCAAACTCAGTGCATAGTTCTTATAAAAAGATCTTCTCTGCAATTGTATCGTGATATAAGCAATTACTGGTTACGTCTTGCTGTCTTTATTGCTTCGGCTATAAGCCTGGGCTCTATCTTCTATCACGTCGGTACAAGTAATCCATCTATTCAGGTTAGAGGATCGCTACTTTCGTTTTTTATATCACTCGTGTCTTTCATGACACTTGTAGGAGGATTCTCTCCCTTGATTGAGGAAATGAAGGTCTTTGAACGAGAGAGATTGAATGGGCACTATGGTATTGCTGCTTTTCTCATTGGCAACATATTATCTGCTATTCCTTACATGCTAATGATCTCTCTCACTTCCGGAGTAATAATTTGTTACCTTTCTGGACTACACAAAGGACTAGAGCACTATTTATACTTTGCTTCTATCCTATTTGCCATTATGATGTGGGTTGAGAGCCTTATGATGGTTGTGGGGAGTATCTTCCCGAATTTTGTGATGGGTGTGATCATTGCTGGTGGAGTCGAAGGACTTGCGATTTTAACAGGTGGATTCTATCGACTTCCTAATGATCTTCCAAAGCCATTATGGAAGTACCCGTGCTACTACATTTCATTTCTCACATATGCTTTACAAGGATCATTCAAGAATGAATTTGAAGGCTTAACATTTGCTGGGTATCATGATGGAACCATTAGTGGTAGAGATTTACTAACTAAGACATGGCATGTGCAAATGGGTCACTCTAAGTGGGTTGATCTTGCTATCATGTTTGGAATGATCATTGTTTATCGAGTTCTATTCTTGGTCATTAGTAAGGTCAAGGAGAAGTCAAAACCCACTATTCCTACCATAAATGGACCCAGAGCAAAAACTTTCTCTAGAACCAATATGGATGAACCCTAA 1893 0.4036 MGGHEGEKGGITVTWENLEAIVTNGKNRKLILQGLTGYAQPGKLLAVMGPSGCGKSTLLDALAGRLRSNIQQSGKILINGKKQTLAYGTSGYVTQDDAMPSTLTAGETLYYSAQLQFPNSMSIAEKKKQADITLREMGLQDAINTRVGGYGSKGLSGGQKRRLSICIEILTHPRLLFLDEPTSGLDSAASYYVMSRIASLSLRDGIQRTIVASIHQPSSEVFKLFHDLCLLSSGETVYFGPASEANQFYASNGFPCPTLYNPSDHYLRIINKDFEQDTEEGFGKGVITEEAIGILVNSYKASEIKSQVQLEVTKISESDLGALRNRRRIHAPFQTQCIVLIKRSSLQLYRDISNYWLRLAVFIASAISLGSIFYHVGTSNPSIQVRGSLLSFFISLVSFMTLVGGFSPLIEEMKVFERERLNGHYGIAAFLIGNILSAIPYMLMISLTSGVIICYLSGLHKGLEHYLYFASILFAIMMWVESLMMVVGSIFPNFVMGVIIAGGVEGLAILTGGFYRLPNDLPKPLWKYPCYYISFLTYALQGSFKNEFEGLTFAGYHDGTISGRDLLTKTWHVQMGHSKWVDLAIMFGMIIVYRVLFLVISKVKEKSKPTIPTINGPRAKTFSRTNMDEP 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03957 630 FunFam ABC transporter G family member 11 11 298 - -
Trre8g03957 630 Pfam ABC-2 type transporter 335 548 IPR013525 GO:0016020|GO:0140359
Trre8g03957 630 SMART AAA_5 41 234 IPR003593 GO:0016887
Trre8g03957 630 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 249 IPR027417 -
Trre8g03957 630 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 13 258 IPR003439 GO:0005524
Trre8g03957 630 ProSitePatterns ABC transporters family signature. 155 169 IPR017871 GO:0005524|GO:0016887
Trre8g03957 630 Pfam ABC-2 type transporter 215 277 IPR043926 GO:0140359
Trre8g03957 630 Pfam ABC transporter 33 183 IPR003439 GO:0005524
Trre8g03957 630 MobiDBLite consensus disorder prediction 611 630 - -
Trre8g03957 630 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 11 613 - -
Trre8g03957 630 Gene3D - 12 258 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03957 Trre-Chr8 44427217 44431797 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03957 42 193 Calmodulin-binding Proteins AT2G36910 33.962 9.69e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03957 K05681 - gmx:100790102 944.495