Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03956 ATGGTTCCTCTTAATCCGAATGTTCAACCAATGGTTCATTTGACCACATTTGGAGAATTAATCCACAAGTCAAAAGAAATGAGTGAAAATGTTGTTGAGGAAGGGGATAAGGAGGGAAATATAACAGTGACATGGGAGAAATTAAGGGTAACTGTTCCAAATGGAAGCAAAAAAAGGAAAGCAATTCTGCAGGGTCTTACAGGTTATGCTCAACCTGGAAGACTTTTGGCTGTTATGGGTCCTTCTGGTTCTGGAAAATCCACACTTCTTGATGCTTTAGCAGGAAGATTAAGCTCAAACATTAAGCACACAGGAAATATTCTAATCAATGGTCACAAACAAGCACTAGCTTATGGAATATCAGGATATGTAACACAAGACGACGCTATGCTGTCAACATTAACGGCCGGAGAAACTTTATACTACTCGGCTCAACTTCAATTTCCAGATTCCATGTCCATAACAGAGAAGAAAGAACAAGCAGATATTATACTCAGAGAAATGGGTCTAATAGATGCTGTTAACACAAGGGTTGGAGGATGGAGTTCAAAAGGCCTAAGTGGTGGACAAAAGAGGAGACTTAGTATTTGCATCGAGATTCTAACTCGCCCGAGACTTCTCTTCCTTGACGAACCAACGAGCGGACTTGATAGTGCAGCTTCTTATTATGTTATGAGCAGGATTGCACGTTTGAATTTAAGCGATGGAATTCGAAGGACTATTGTTGTATCCATCCACCAACCTAGCAGTGAAGTTTTTGAACTTTTTCATGATCTTTGTCTTCTGTCTTCGGGCGAAACTGTGTATTTTGGTCCAGCCTATGATGCAAATCAGTTTTTTACTGCAAATGGTTTTCCTTGTCCAACACTCCACAATCCTTCAGATCACTACTTAAGGATCATAAACAAAGATTTTGAAATGGATGTTGAAGAAGGCTCTGGTAAGGGAATGACCACAGAAGAAGCAATTGGTATCCTTGTAAAGTCTTATAAATCGTCAAAAATTAGAAACCGAGTAAAAAAAGAAGTGGCAAAAATAACTGAAAGTGACTCTGGTGCAATAGGGAAGAAGAGGATCCATGCTGCATTTATCACTCAATGCCTTGTTCTTATAAGAAGATCTTCATTGCAATTGTTTCGCGACATTGGCAATTATTGGCTCCGTTTAGTTGTCTTCATTTTAATTGCTATAAGCATTGGTTCTATCTTCTTTAACATTGGTTCAAGTAGTGGATCAGTATCTCCTCAGGGAAGAGGTTCTTTGCTCACATTTCTTATTTCAGTTCTTACATTCATGACCCTTGTTGGTGGATTCTCTCCTCTTTTGGAGGAAATGAAGGTATTTGAACGAGAGAGATTGAACGGACACTATGGTGTTACTGCTTTTCTAATTGGCAATATATTTTCTGCTATTCCTTACATGCTAATGATCTCTCTAATTCCTGGAGGAATAGCATACTATCTATGTGGAATGCACAAAGGACTAGAAAACTTTATATACTTCATTTCATTACTATTAGCCATTGTGATGTGGGTTGAGAGTCTTATGTTAGTTATTGGAAGCATATCTCCAAATTATGTAATAGGAATGTTCATTACTGGTGGAATTGAAGGATTAATGATTTTAACTGGTGGATTCTATAGATTACCAAATGAACTTCCTAAACCAATATGGAAATACCCTTTATACCATGTATCTTTCCTTAAGTATGCATTTCAAGGATCATTCAAAAATGAATTTGAAGGGTTAAATGTTTTGATAGGGACCAAAACTATTAGTGGTAAGGAAATATTGGCTGAGACATGGCATGTTGAAATGGGTCACTCTAAGTGGGTTGATCTTGCTATCATGTTTGGTATGATTGTATTATATAGAGTTTTATTCTTGATAATTACTAAGAGCAAGGAGAAGTTCAAGAATTTTGTTGCAGTCATAAGTGGTCCTTAA 1947 0.3729 MVPLNPNVQPMVHLTTFGELIHKSKEMSENVVEEGDKEGNITVTWEKLRVTVPNGSKKRKAILQGLTGYAQPGRLLAVMGPSGSGKSTLLDALAGRLSSNIKHTGNILINGHKQALAYGISGYVTQDDAMLSTLTAGETLYYSAQLQFPDSMSITEKKEQADIILREMGLIDAVNTRVGGWSSKGLSGGQKRRLSICIEILTRPRLLFLDEPTSGLDSAASYYVMSRIARLNLSDGIRRTIVVSIHQPSSEVFELFHDLCLLSSGETVYFGPAYDANQFFTANGFPCPTLHNPSDHYLRIINKDFEMDVEEGSGKGMTTEEAIGILVKSYKSSKIRNRVKKEVAKITESDSGAIGKKRIHAAFITQCLVLIRRSSLQLFRDIGNYWLRLVVFILIAISIGSIFFNIGSSSGSVSPQGRGSLLTFLISVLTFMTLVGGFSPLLEEMKVFERERLNGHYGVTAFLIGNIFSAIPYMLMISLIPGGIAYYLCGMHKGLENFIYFISLLLAIVMWVESLMLVIGSISPNYVIGMFITGGIEGLMILTGGFYRLPNELPKPIWKYPLYHVSFLKYAFQGSFKNEFEGLNVLIGTKTISGKEILAETWHVEMGHSKWVDLAIMFGMIVLYRVLFLIITKSKEKFKNFVAVISGP 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03956 648 ProSitePatterns ABC transporters family signature. 186 200 IPR017871 GO:0005524|GO:0016887
Trre8g03956 648 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 33 643 - -
Trre8g03956 648 Pfam ABC-2 type transporter 246 309 IPR043926 GO:0140359
Trre8g03956 648 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 289 IPR003439 GO:0005524
Trre8g03956 648 SMART AAA_5 72 265 IPR003593 GO:0016887
Trre8g03956 648 FunFam ABC transporter G family member 11 41 329 - -
Trre8g03956 648 Gene3D - 42 296 IPR027417 -
Trre8g03956 648 Pfam ABC-2 type transporter 365 580 IPR013525 GO:0016020|GO:0140359
Trre8g03956 648 Pfam ABC transporter 64 214 IPR003439 GO:0005524
Trre8g03956 648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 280 IPR027417 -
Trre8g03956 648 CDD ABCG_EPDR 41 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03956 Trre-Chr8 44415344 44419314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03956 73 250 Calmodulin-binding Proteins AT2G36910 31.915 2.43e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03956 K05681 - gmx:100790102 985.326